- Evo_source
- “Evo_source” column indicates that whether this record is a known precursor miRNA (pre-mir) from miRBase 13.0, an orthologous pre-mir highly similar to pre-mirs from other species or a paralogous pre-mir highly similar to pre-mirs from own species.
- Species_No
- In “Species_No” column, the value “a/b” indicates that a out of 86 (22+34+30) species are known to encode this pre-mir class and b out of 86 species are known or predicted to encode this pre-miR class.
- Distribution
- In “Distribution” column, the value “c/d” indicates that c pre-mirs in this own species belong to this pre-mir class and that d pre-mirs in all 86 (22+34+30) species belong to this pre-mir class.
Index | ID | Species | Mature miRNA (MatMiR) |
Match/ MatMiR Length |
Chrom | Strand | MatMiR Position |
PreMir Position |
Confidence | Evo_ Source |
Species_ No |
Distribution |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | aga-mir-1 | Anopheles gambiae | aga-miR-1 | 22/22 | chr3R | - | 62-83 | N/A | - | miRBase_13_0 | 41/61 | 2/166 |
2 | ame-mir-1 | Apis mellifera | ame-miR-1 | 22/22 | GroupUn.3013 | - | 52-73 | N/A | - | miRBase_13_0 | 41/61 | 3/166 |
3 | bmo-mir-1 | Bombyx mori | bmo-miR-1 | 22/22 | nscaf2589 | - | 53-74 | N/A | - | miRBase_13_0 | 41/61 | 1/166 |
4 | bta-mir-1-1 | Bos taurus | bta-miR-1 | 22/22 | chr13 | - | 49-70 | N/A | - | miRBase_13_0 | 41/61 | 4/166 |
5 | bta-mir-1-2 | Bos taurus | bta-miR-1 | 22/22 | chr24 | + | 53-74 | N/A | - | miRBase_13_0 | 41/61 | 4/166 |
6 | bfl-mir-1 | Branchiostoma floridae | bfl-miR-1 | 22/22 | Bf_V2_185 | + | 56-77 | N/A | - | miRBase_13_0 | 41/61 | 5/166 |
7 | cbr-mir-1 | Caenorhabditis briggsae | cbr-miR-1 | 21/21 | cb25.fpc2888 | - | 56-76 | N/A | - | miRBase_13_0 | 41/61 | 3/166 |
8 | cel-mir-1 | Caenorhabditis elegans | cel-miR-1 | 21/21 | chrI | - | 61-81 | N/A | - | miRBase_13_0 | 41/61 | 2/166 |
9 | cfa-mir-1-1 | Canis familiaris | cfa-miR-1 | 21/21 | chr24 | + | 39-59 | N/A | - | miRBase_13_0 | 41/61 | 4/166 |
10 | cfa-mir-1-2 | Canis familiaris | cfa-miR-1 | 21/21 | chr7 | + | 39-59 | N/A | - | miRBase_13_0 | 41/61 | 4/166 |
11 | cap-mir-1 | Capitella sp. | cap-miR-1 | 22/22 | scaffold_274 | - | 59-80 | N/A | - | miRBase_13_0 | 41/61 | 1/166 |
12 | dre-mir-1-1 | Danio rerio | dre-miR-1 | 22/22 | chr23 | - | 62-83 | N/A | - | miRBase_13_0 | 41/61 | 3/166 |
13 | dre-mir-1-2 | Danio rerio | dre-miR-1 | 22/22 | chr2 | - | 54-75 | N/A | - | miRBase_13_0 | 41/61 | 3/166 |
14 | dan-mir-1 | Drosophila ananassae | dan-miR-1 | 22/22 | N/A | N/A | 54-75 | N/A | - | miRBase_13_0 | 41/61 | 2/166 |
15 | der-mir-1 | Drosophila erecta | der-miR-1 | 22/22 | N/A | N/A | 54-75 | N/A | - | miRBase_13_0 | 41/61 | 2/166 |
16 | dgr-mir-1 | Drosophila grimshawi | dgr-miR-1 | 22/22 | N/A | N/A | 53-74 | N/A | - | miRBase_13_0 | 41/61 | 2/166 |
17 | dme-mir-1 | Drosophila melanogaster | dme-miR-1 | 22/22 | chr2L | + | 56-77 | N/A | - | miRBase_13_0 | 41/61 | 1/166 |
18 | dmo-mir-1 | Drosophila mojavensis | dmo-miR-1 | 22/22 | N/A | N/A | 56-77 | N/A | - | miRBase_13_0 | 41/61 | 2/166 |
19 | dpe-mir-1 | Drosophila persimilis | dpe-miR-1 | 22/22 | N/A | N/A | 53-74 | N/A | - | miRBase_13_0 | 41/61 | 2/166 |
20 | dps-mir-1 | Drosophila pseudoobscura | dps-miR-1 | 22/22 | chr4_group3 | - | 53-74 | N/A | - | miRBase_13_0 | 41/61 | 1/166 |
21 | dse-mir-1 | Drosophila sechellia | dse-miR-1 | 22/22 | N/A | N/A | 54-75 | N/A | - | miRBase_13_0 | 41/61 | 3/166 |
22 | dsi-mir-1 | Drosophila simulans | dsi-miR-1 | 22/22 | N/A | N/A | 54-75 | N/A | - | miRBase_13_0 | 41/61 | 3/166 |
23 | dvi-mir-1 | Drosophila virilis | dvi-miR-1 | 22/22 | N/A | N/A | 53-74 | N/A | - | miRBase_13_0 | 41/61 | 2/166 |
24 | dwi-mir-1 | Drosophila willistoni | dwi-miR-1 | 22/22 | N/A | N/A | 55-76 | N/A | - | miRBase_13_0 | 41/61 | 2/166 |
25 | dya-mir-1 | Drosophila yakuba | dya-miR-1 | 22/22 | N/A | N/A | 55-76 | N/A | - | miRBase_13_0 | 41/61 | 2/166 |
26 | fru-mir-1 | Fugu rubripes | fru-miR-1 | 22/22 | scaffold_68 | + | 49-70 | N/A | - | miRBase_13_0 | 41/61 | 3/166 |
27 | gga-mir-1a-1 | Gallus gallus | gga-miR-1a | 21/21 | chr20 | + | 46-66 | N/A | - | miRBase_13_0 | 41/61 | 6/166 |
28 | gga-mir-1a-2 | Gallus gallus | gga-miR-1a | 21/21 | chr2 | - | 53-73 | N/A | - | miRBase_13_0 | 41/61 | 6/166 |
29 | gga-mir-1b | Gallus gallus | gga-miR-1b | 21/21 | chr23 | + | 42-62 | N/A | - | miRBase_13_0 | 41/61 | 6/166 |
30 | gga-mir-1c | Gallus gallus | gga-miR-1c | 22/22 | chr7 | + | 12-33 | N/A | - | miRBase_13_0 | 41/61 | 6/166 |
31 | hsa-mir-1-1 | Homo sapiens | hsa-miR-1 | 22/22 | chr20 | + | 46-67 | 60561958-60562028 | - | miRBase_13_0 | 41/61 | 4/166 |
32 | hsa-mir-1-2 | Homo sapiens | hsa-miR-1 | 22/22 | chr18 | - | 53-74 | 17662963-17663047 | - | miRBase_13_0 | 41/61 | 4/166 |
33 | lgi-mir-1 | Lottia gigantea | lgi-miR-1 | 22/22 | sca_1 | - | 56-77 | N/A | - | miRBase_13_0 | 41/61 | 1/166 |
34 | mml-mir-1-1 | Macaca mulatta | mml-miR-1 | 22/22 | chr10 | - | 49-70 | N/A | - | miRBase_13_0 | 41/61 | 4/166 |
35 | mml-mir-1-2 | Macaca mulatta | mml-miR-1 | 22/22 | chr18 | - | 46-67 | N/A | - | miRBase_13_0 | 41/61 | 4/166 |
36 | mdo-mir-1 | Monodelphis domestica | mdo-miR-1 | 21/21 | chr3 | + | 53-73 | N/A | - | miRBase_13_0 | 41/61 | 3/166 |
37 | mmu-mir-1-1 | Mus musculus | mmu-miR-1 | 22/22 | chr2 | + | 49-70 | N/A | - | miRBase_13_0 | 41/61 | 4/166 |
38 | mmu-mir-1-2 | Mus musculus | mmu-miR-1 | 22/22 | chr18 | - | 47-68 | N/A | - | miRBase_13_0 | 41/61 | 4/166 |
39 | mmu-mir-1-2-as | Mus musculus | mmu-miR-1-2-as | 21/21 | chr18 | + | 41-61 | N/A | - | miRBase_13_0 | 41/61 | 4/166 |
40 | odi-mir-1a | Oikopleura dioica | odi-miR-1a | 22/22 | N/A | N/A | 66-87 | N/A | - | miRBase_13_0 | 41/61 | 3/166 |
41 | odi-mir-1b | Oikopleura dioica | odi-miR-1b | 22/22 | N/A | N/A | 66-87 | N/A | - | miRBase_13_0 | 41/61 | 3/166 |
42 | odi-mir-1c | Oikopleura dioica | odi-miR-1c | 22/22 | N/A | N/A | 66-87 | N/A | - | miRBase_13_0 | 41/61 | 3/166 |
43 | oan-mir-1a | Ornithorhynchus anatinus | oan-miR-1a | 22/22 | chr7 | + | 62-83 | N/A | - | miRBase_13_0 | 41/61 | 4/166 |
44 | oan-mir-1b | Ornithorhynchus anatinus | oan-miR-1b | 22/22 | Ultra299 | + | 41-62 | N/A | - | miRBase_13_0 | 41/61 | 4/166 |
45 | ppa-mir-1 | Pan paniscus | ppa-miR-1 | 21/21 | N/A | N/A | 53-73 | N/A | - | miRBase_13_0 | 41/61 | 1/166 |
46 | ptr-mir-1-1 | Pan troglodytes | ptr-miR-1 | 22/22 | chr20 | + | 45-66 | N/A | - | miRBase_13_0 | 41/61 | 4/166 |
47 | ptr-mir-1-2 | Pan troglodytes | ptr-miR-1 | 22/22 | chr18 | - | 53-74 | N/A | - | miRBase_13_0 | 41/61 | 4/166 |
48 | rno-mir-1 | Rattus norvegicus | rno-miR-1* | 22/22 | chr18 | - | 13-34 | N/A | - | miRBase_13_0 | 41/61 | 1/166 |
49 | rno-mir-1 | Rattus norvegicus | rno-miR-1 | 22/22 | chr18 | - | 54-75 | N/A | - | miRBase_13_0 | 41/61 | 1/166 |
50 | sko-mir-1 | Saccoglossus kowalevskii | sko-miR-1 | 22/22 | N/A | N/A | 58-79 | N/A | - | miRBase_13_0 | 41/61 | 1/166 |
51 | sme-mir-1a | Schmidtea mediterranea | sme-miR-1a | 22/22 | Contig7932.2 | + | 50-71 | N/A | - | miRBase_13_0 | 41/61 | 3/166 |
52 | sme-mir-1b | Schmidtea mediterranea | sme-miR-1b | 22/22 | Contig615.2 | + | 52-73 | N/A | - | miRBase_13_0 | 41/61 | 3/166 |
53 | sme-mir-1c | Schmidtea mediterranea | sme-miR-1c | 21/21 | Contig615.2 | + | 48-68 | N/A | - | miRBase_13_0 | 41/61 | 3/166 |
54 | spu-mir-1 | Strongylocentrotus purpuratus | spu-miR-1 | 22/22 | N/A | N/A | 60-81 | N/A | - | miRBase_13_0 | 41/61 | 2/166 |
55 | ssc-mir-1a | Sus scrofa | ssc-miR-1a | 21/21 | chr17 | + | 64-84 | N/A | - | miRBase_13_0 | 41/61 | 1/166 |
56 | tni-mir-1 | Tetraodon nigroviridis | tni-miR-1 | 22/22 | chr15_random | - | 57-78 | N/A | - | miRBase_13_0 | 41/61 | 4/166 |
57 | tca-mir-1 | Tribolium castaneum | tca-miR-1 | 22/22 | CM000280.1 | - | 47-68 | N/A | - | miRBase_13_0 | 41/61 | 2/166 |
58 | xtr-mir-1a-1 | Xenopus tropicalis | xtr-miR-1a | 21/21 | scaffold_84 | - | 53-73 | N/A | - | miRBase_13_0 | 41/61 | 6/166 |
59 | xtr-mir-1a-2 | Xenopus tropicalis | xtr-miR-1a | 21/21 | scaffold_1016 | + | 47-67 | N/A | - | miRBase_13_0 | 41/61 | 6/166 |
60 | xtr-mir-1b | Xenopus tropicalis | xtr-miR-1b | 21/21 | scaffold_411 | + | 42-62 | N/A | - | miRBase_13_0 | 41/61 | 6/166 |
Total | 60 record(s). |