- Evo_source
- “Evo_source” column indicates that whether this record is a known precursor miRNA (pre-mir) from miRBase 13.0, an orthologous pre-mir highly similar to pre-mirs from other species or a paralogous pre-mir highly similar to pre-mirs from own species.
- Species_No
- In “Species_No” column, the value “a/b” indicates that a out of 86 (22+34+30) species are known to encode this pre-mir class and b out of 86 species are known or predicted to encode this pre-miR class.
- Distribution
- In “Distribution” column, the value “c/d” indicates that c pre-mirs in this own species belong to this pre-mir class and that d pre-mirs in all 86 (22+34+30) species belong to this pre-mir class.
Index | ID | Species | Mature miRNA (MatMiR) |
Match/ MatMiR Length |
Chrom | Strand | MatMiR Position |
PreMir Position |
Confidence | Evo_ Source |
Species_ No |
Distribution |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | anoCar1-143 | Anolis carolinensis | mmu-miR-1-2-as | 21/21 | scaffold_21 | - | 12-32 | 2573392-2573473 | 0.879229 | Ortholog | 41/61 | 4/166 |
2 | anoCar1-28 | Anolis carolinensis | mmu-miR-1-2-as | 20/21 | scaffold_1124 | + | 6-26 | 93822-93893 | 0.944837 | Ortholog | 41/61 | 4/166 |
3 | anoCar1-314 | Anolis carolinensis | rno-miR-1* | 22/22 | scaffold_70 | + | 8-29 | 388010-388086 | 0.843733 | Ortholog | 41/61 | 4/166 |
4 | anoCar1-320 | Anolis carolinensis | mmu-miR-1-2-as | 21/21 | scaffold_70 | - | 11-31 | 388007-388087 | 0.89589 | Ortholog | 41/61 | 4/166 |
5 | caePb2-22 | Caenorhabditis brenneri | sko-miR-1 | 20/22 | chrUn | + | 50-70 | 90239923-90239998 | 0.998206 | Ortholog | 41/61 | 2/166 |
6 | caePb2-22 | Caenorhabditis brenneri | cap-miR-1 | 22/22 | chrUn | + | 50-71 | 90239923-90239998 | 0.997492 | Ortholog | 41/61 | 2/166 |
7 | caePb2-75 | Caenorhabditis brenneri | sko-miR-1 | 20/22 | chrUn | - | 50-70 | 167631872-167631947 | 0.998206 | Ortholog | 41/61 | 2/166 |
8 | caePb2-75 | Caenorhabditis brenneri | cap-miR-1 | 22/22 | chrUn | - | 49-70 | 167631873-167631946 | 0.996576 | Ortholog | 41/61 | 2/166 |
9 | caeJap1-27 | Caenorhabditis japonica | sko-miR-1 | 20/22 | chrUn | + | 51-71 | 124179233-124179303 | 0.929928 | Ortholog | 41/61 | 1/166 |
10 | caeRem3-29 | Caenorhabditis remanei | sko-miR-1 | 20/22 | chrUn | + | 50-70 | 145319812-145319888 | 0.998042 | Ortholog | 41/61 | 3/166 |
11 | caeRem3-29 | Caenorhabditis remanei | cap-miR-1 | 22/22 | chrUn | + | 50-71 | 145319812-145319888 | 0.997946 | Ortholog | 41/61 | 3/166 |
12 | caeRem3-71 | Caenorhabditis remanei | mmu-miR-1-2-as | 21/21 | chrUn | - | 7-27 | 145319812-145319886 | 0.997183 | Ortholog | 41/61 | 3/166 |
13 | caeRem3-72 | Caenorhabditis remanei | odi-miR-1a | 20/22 | chrUn | - | 49-70 | 145925603-145925676 | 0.962655 | Ortholog | 41/61 | 3/166 |
14 | calJac1-334 | Callithrix jacchus | cap-miR-1 | 21/22 | Contig262 | + | 51-71 | 546908-546988 | 0.996294 | Ortholog | 41/61 | 4/166 |
15 | calJac1-334 | Callithrix jacchus | sko-miR-1 | 21/22 | Contig262 | + | 51-72 | 546908-546988 | 0.997075 | Ortholog | 41/61 | 4/166 |
16 | calJac1-334 | Callithrix jacchus | rno-miR-1* | 20/22 | Contig262 | + | 11-30 | 546909-546987 | 0.986915 | Ortholog | 41/61 | 4/166 |
17 | calJac1-340 | Callithrix jacchus | mmu-miR-1-2-as | 21/21 | Contig262 | - | 11-31 | 546907-546987 | 0.952326 | Ortholog | 41/61 | 4/166 |
18 | calJac1-47 | Callithrix jacchus | cap-miR-1 | 21/22 | Contig12459 | + | 51-71 | 20135-20216 | 0.999729 | Ortholog | 41/61 | 4/166 |
19 | calJac1-47 | Callithrix jacchus | sko-miR-1 | 21/22 | Contig12459 | + | 51-72 | 20135-20216 | 0.999811 | Ortholog | 41/61 | 4/166 |
20 | calJac1-52 | Callithrix jacchus | mmu-miR-1-2-as | 21/21 | Contig12459 | - | 11-31 | 20134-20214 | 0.978677 | Ortholog | 41/61 | 4/166 |
21 | cavPor3-147 | Cavia porcellus | cap-miR-1 | 20/22 | scaffold_119 | - | 50-70 | 1571464-1571543 | 0.999013 | Ortholog | 41/61 | 2/166 |
22 | cavPor3-147 | Cavia porcellus | sko-miR-1 | 20/22 | scaffold_119 | - | 49-70 | 1571466-1571542 | 0.999155 | Ortholog | 41/61 | 2/166 |
23 | cavPor3-218 | Cavia porcellus | sko-miR-1 | 21/22 | scaffold_14 | + | 51-72 | 40571800-40571878 | 0.9655 | Ortholog | 41/61 | 2/166 |
24 | cavPor3-218 | Cavia porcellus | cap-miR-1 | 21/22 | scaffold_14 | + | 51-71 | 40571800-40571878 | 0.957327 | Ortholog | 41/61 | 2/166 |
25 | dasNov1-136 | Dasypus novemcinctus | mmu-miR-1-2-as | 21/21 | scaffold_2397 | + | 10-30 | N/A | 0.945758 | Ortholog | 41/61 | 4/166 |
26 | dasNov1-141 | Dasypus novemcinctus | sko-miR-1 | 21/22 | scaffold_2397 | - | 49-70 | N/A | 0.990892 | Ortholog | 41/61 | 4/166 |
27 | dasNov1-141 | Dasypus novemcinctus | cap-miR-1 | 21/22 | scaffold_2397 | - | 50-70 | N/A | 0.993714 | Ortholog | 41/61 | 4/166 |
28 | dasNov1-141 | Dasypus novemcinctus | rno-miR-1* | 20/22 | scaffold_2397 | - | 13-32 | N/A | 0.993677 | Ortholog | 41/61 | 4/166 |
29 | dasNov1-262 | Dasypus novemcinctus | mmu-miR-1-2-as | 21/21 | scaffold_52116 | + | 15-35 | N/A | 0.995576 | Ortholog | 41/61 | 4/166 |
30 | dasNov1-263 | Dasypus novemcinctus | sko-miR-1 | 21/22 | scaffold_52116 | - | 49-70 | N/A | 0.999443 | Ortholog | 41/61 | 4/166 |
31 | dasNov1-263 | Dasypus novemcinctus | cap-miR-1 | 21/22 | scaffold_52116 | - | 50-70 | N/A | 0.999215 | Ortholog | 41/61 | 4/166 |
32 | equCab1-283 | Equus caballus | sko-miR-1 | 21/22 | chr22 | + | 51-72 | 48478164-48478245 | 0.999377 | Ortholog | 41/61 | 4/166 |
33 | equCab1-283 | Equus caballus | cap-miR-1 | 21/22 | chr22 | + | 51-71 | 48478164-48478245 | 0.99915 | Ortholog | 41/61 | 4/166 |
34 | equCab1-294 | Equus caballus | mmu-miR-1-2-as | 21/21 | chr22 | - | 12-32 | 48478163-48478244 | 0.908231 | Ortholog | 41/61 | 4/166 |
35 | equCab1-564 | Equus caballus | cap-miR-1 | 21/22 | chr8 | + | 51-71 | 33177521-33177601 | 0.996294 | Ortholog | 41/61 | 4/166 |
36 | equCab1-564 | Equus caballus | rno-miR-1* | 20/22 | chr8 | + | 11-30 | 33177522-33177600 | 0.986915 | Ortholog | 41/61 | 4/166 |
37 | equCab1-564 | Equus caballus | sko-miR-1 | 21/22 | chr8 | + | 51-72 | 33177521-33177601 | 0.997075 | Ortholog | 41/61 | 4/166 |
38 | equCab1-576 | Equus caballus | mmu-miR-1-2-as | 21/21 | chr8 | - | 11-31 | 33177520-33177600 | 0.952326 | Ortholog | 41/61 | 4/166 |
39 | eriEur1-129 | Erinaceus europaeus | mmu-miR-1-2-as | 21/21 | scaffold_339730 | + | 8-28 | N/A | 0.959901 | Ortholog | 41/61 | 4/166 |
40 | eriEur1-134 | Erinaceus europaeus | sko-miR-1 | 21/22 | scaffold_339730 | - | 49-70 | N/A | 0.999625 | Ortholog | 41/61 | 4/166 |
41 | eriEur1-134 | Erinaceus europaeus | cap-miR-1 | 21/22 | scaffold_339730 | - | 50-70 | N/A | 0.999488 | Ortholog | 41/61 | 4/166 |
42 | eriEur1-255 | Erinaceus europaeus | sko-miR-1 | 21/22 | scaffold_366662 | + | 51-72 | N/A | 0.998462 | Ortholog | 41/61 | 4/166 |
43 | eriEur1-255 | Erinaceus europaeus | rno-miR-1* | 20/22 | scaffold_366662 | + | 11-30 | N/A | 0.996371 | Ortholog | 41/61 | 4/166 |
44 | eriEur1-255 | Erinaceus europaeus | cap-miR-1 | 21/22 | scaffold_366662 | + | 51-71 | N/A | 0.997948 | Ortholog | 41/61 | 4/166 |
45 | eriEur1-261 | Erinaceus europaeus | mmu-miR-1-2-as | 21/21 | scaffold_366662 | - | 9-29 | N/A | 0.922387 | Ortholog | 41/61 | 4/166 |
46 | felCat3-190 | Felis catus | cap-miR-1 | 21/22 | scaffold_164881 | + | 51-71 | 196438-196521 | 0.999948 | Ortholog | 41/61 | 2/166 |
47 | felCat3-190 | Felis catus | sko-miR-1 | 21/22 | scaffold_164881 | + | 51-72 | 196438-196521 | 0.999961 | Ortholog | 41/61 | 2/166 |
48 | felCat3-195 | Felis catus | mmu-miR-1-2-as | 21/21 | scaffold_164881 | - | 14-34 | 196437-196520 | 0.974909 | Ortholog | 41/61 | 2/166 |
49 | gasAcu1-104 | Gasterosteus aculeatus | mmu-miR-1-2-as | 21/21 | chrIII | - | 8-28 | 13603680-13603756 | 0.953515 | Ortholog | 41/61 | 3/166 |
50 | gasAcu1-450 | Gasterosteus aculeatus | mmu-miR-1-2-as | 21/21 | chrXII | + | 8-28 | 2446638-2446712 | 0.996813 | Ortholog | 41/61 | 3/166 |
51 | gasAcu1-486 | Gasterosteus aculeatus | cap-miR-1 | 21/22 | chrXII | - | 50-70 | 2446634-2446713 | 0.999574 | Ortholog | 41/61 | 3/166 |
52 | gasAcu1-486 | Gasterosteus aculeatus | sko-miR-1 | 21/22 | chrXII | - | 49-70 | 2446636-2446712 | 0.999693 | Ortholog | 41/61 | 3/166 |
53 | loxAfr1-75 | Loxodonta africana | mmu-miR-1-2-as | 21/21 | scaffold_16580 | + | 10-30 | N/A | 0.945758 | Ortholog | 41/61 | 2/166 |
54 | loxAfr1-76 | Loxodonta africana | rno-miR-1* | 20/22 | scaffold_16580 | - | 13-32 | N/A | 0.993677 | Ortholog | 41/61 | 2/166 |
55 | loxAfr1-76 | Loxodonta africana | sko-miR-1 | 21/22 | scaffold_16580 | - | 49-70 | N/A | 0.990892 | Ortholog | 41/61 | 2/166 |
56 | loxAfr1-76 | Loxodonta africana | cap-miR-1 | 21/22 | scaffold_16580 | - | 50-70 | N/A | 0.993714 | Ortholog | 41/61 | 2/166 |
57 | oryCun1-408 | Oryctolagus cuniculus | rno-miR-1* | 20/22 | scaffold_207756 | - | 13-32 | N/A | 0.993677 | Ortholog | 41/61 | 1/166 |
58 | oryCun1-408 | Oryctolagus cuniculus | sko-miR-1 | 21/22 | scaffold_207756 | - | 49-70 | N/A | 0.990892 | Ortholog | 41/61 | 1/166 |
59 | oryCun1-408 | Oryctolagus cuniculus | odi-miR-1c | 20/22 | scaffold_207756 | - | 50-69 | N/A | 0.994338 | Ortholog | 41/61 | 1/166 |
60 | oryCun1-408 | Oryctolagus cuniculus | cap-miR-1 | 21/22 | scaffold_207756 | - | 50-70 | N/A | 0.993714 | Ortholog | 41/61 | 1/166 |
61 | oryLat2-166 | Oryzias latipes | mmu-miR-1-2-as | 21/21 | chr17 | + | 11-31 | 29410136-29410215 | 0.953406 | Ortholog | 41/61 | 4/166 |
62 | oryLat2-177 | Oryzias latipes | cap-miR-1 | 21/22 | chr17 | - | 50-70 | 29410136-29410214 | 0.991931 | Ortholog | 41/61 | 4/166 |
63 | oryLat2-177 | Oryzias latipes | sko-miR-1 | 21/22 | chr17 | - | 49-70 | 29410138-29410213 | 0.992602 | Ortholog | 41/61 | 4/166 |
64 | oryLat2-177 | Oryzias latipes | odi-miR-1c | 20/22 | chr17 | - | 50-69 | 29410136-29410214 | 0.993483 | Ortholog | 41/61 | 4/166 |
65 | oryLat2-177 | Oryzias latipes | rno-miR-1* | 20/22 | chr17 | - | 12-31 | 29410135-29410216 | 0.985166 | Ortholog | 41/61 | 4/166 |
66 | oryLat2-341 | Oryzias latipes | cap-miR-1 | 21/22 | chr7 | + | 51-71 | 5261670-5261751 | 0.99967 | Ortholog | 41/61 | 4/166 |
67 | oryLat2-341 | Oryzias latipes | odi-miR-1c | 20/22 | chr7 | + | 52-71 | 5261669-5261752 | 0.99978 | Ortholog | 41/61 | 4/166 |
68 | oryLat2-341 | Oryzias latipes | sko-miR-1 | 21/22 | chr7 | + | 51-72 | 5261670-5261751 | 0.999769 | Ortholog | 41/61 | 4/166 |
69 | oryLat2-372 | Oryzias latipes | mmu-miR-1-2-as | 21/21 | chr7 | - | 11-31 | 5261669-5261749 | 0.994485 | Ortholog | 41/61 | 4/166 |
70 | otoGar1-2 | Otolemur garnettii | sko-miR-1 | 21/22 | scaffold_100994.1-77484 | + | 51-72 | N/A | 0.999861 | Ortholog | 41/61 | 2/166 |
71 | otoGar1-2 | Otolemur garnettii | cap-miR-1 | 21/22 | scaffold_100994.1-77484 | + | 51-71 | N/A | 0.9998 | Ortholog | 41/61 | 2/166 |
72 | otoGar1-3 | Otolemur garnettii | mmu-miR-1-2-as | 21/21 | scaffold_100994.1-77484 | - | 12-32 | N/A | 0.960466 | Ortholog | 41/61 | 2/166 |
73 | petMar1-1 | Petromyzon marinus | mmu-miR-1-2-as | 19/21 | Contig100086 | + | 10-29 | 3832-3908 | 0.981916 | Ortholog | 41/61 | 4/166 |
74 | petMar1-2 | Petromyzon marinus | cel-miR-1 | 19/21 | Contig100086 | - | 49-68 | 3831-3907 | 0.999197 | Ortholog | 41/61 | 4/166 |
75 | petMar1-70 | Petromyzon marinus | mmu-miR-1-2-as | 19/21 | Contig37000 | + | 12-30 | 8210-8289 | 0.829451 | Ortholog | 41/61 | 4/166 |
76 | petMar1-71 | Petromyzon marinus | cel-miR-1 | 19/21 | Contig37000 | - | 51-69 | 8209-8288 | 0.999858 | Ortholog | 41/61 | 4/166 |
77 | petMar1-71 | Petromyzon marinus | dme-miR-1 | 20/22 | Contig37000 | - | 50-69 | 8210-8287 | 0.999761 | Ortholog | 41/61 | 4/166 |
78 | ponAbe2-335 | Pongo abelii | mmu-miR-1-2-as | 21/21 | chr18_random | + | 11-31 | 68678-68757 | 0.969076 | Ortholog | 41/61 | 4/166 |
79 | ponAbe2-341 | Pongo abelii | cap-miR-1 | 21/22 | chr18_random | - | 50-70 | 68677-68756 | 0.997064 | Ortholog | 41/61 | 4/166 |
80 | ponAbe2-341 | Pongo abelii | sko-miR-1 | 21/22 | chr18_random | - | 49-70 | 68678-68755 | 0.996177 | Ortholog | 41/61 | 4/166 |
81 | ponAbe2-341 | Pongo abelii | rno-miR-1* | 20/22 | chr18_random | - | 13-32 | 68676-68757 | 0.994986 | Ortholog | 41/61 | 4/166 |
82 | ponAbe2-487 | Pongo abelii | sko-miR-1 | 21/22 | chr20 | + | 51-72 | 60885106-60885187 | 0.999811 | Ortholog | 41/61 | 4/166 |
83 | ponAbe2-487 | Pongo abelii | cap-miR-1 | 21/22 | chr20 | + | 51-71 | 60885106-60885187 | 0.999729 | Ortholog | 41/61 | 4/166 |
84 | ponAbe2-501 | Pongo abelii | mmu-miR-1-2-as | 21/21 | chr20 | - | 11-31 | 60885105-60885185 | 0.978677 | Ortholog | 41/61 | 4/166 |
85 | priPac1-22 | Pristionchus pacificus | sko-miR-1 | 20/22 | chrUn | - | 50-70 | 9699722-9699795 | 0.998168 | Ortholog | 41/61 | 1/166 |
86 | sorAra1-168 | Sorex araneus | rno-miR-1* | 20/22 | scaffold_250439 | + | 12-31 | N/A | 0.996536 | Ortholog | 41/61 | 2/166 |
87 | sorAra1-168 | Sorex araneus | sko-miR-1 | 20/22 | scaffold_250439 | + | 51-71 | N/A | 0.99813 | Ortholog | 41/61 | 2/166 |
88 | sorAra1-173 | Sorex araneus | mmu-miR-1-2-as | 21/21 | scaffold_250439 | - | 10-30 | N/A | 0.988143 | Ortholog | 41/61 | 2/166 |
89 | taeGut1-151 | Taeniopygia guttata | mmu-miR-1-2-as | 21/21 | chr2 | + | 10-30 | 108164866-108164944 | 0.965483 | Ortholog | 41/61 | 4/166 |
90 | taeGut1-173 | Taeniopygia guttata | rno-miR-1* | 22/22 | chr2 | - | 10-31 | 108164864-108164944 | 0.860308 | Ortholog | 41/61 | 4/166 |
91 | taeGut1-173 | Taeniopygia guttata | sko-miR-1 | 21/22 | chr2 | - | 49-70 | 108164866-108164942 | 0.97091 | Ortholog | 41/61 | 4/166 |
92 | taeGut1-173 | Taeniopygia guttata | cap-miR-1 | 21/22 | chr2 | - | 50-70 | 108164865-108164943 | 0.981471 | Ortholog | 41/61 | 4/166 |
93 | taeGut1-179 | Taeniopygia guttata | mmu-miR-1-2-as | 21/21 | chr20 | + | 8-28 | 10493676-10493750 | 0.940613 | Ortholog | 41/61 | 4/166 |
94 | taeGut1-192 | Taeniopygia guttata | sko-miR-1 | 21/22 | chr20 | - | 49-70 | 10493674-10493750 | 0.998938 | Ortholog | 41/61 | 4/166 |
95 | taeGut1-192 | Taeniopygia guttata | cap-miR-1 | 21/22 | chr20 | - | 50-70 | 10493673-10493751 | 0.999043 | Ortholog | 41/61 | 4/166 |
Total | 95 record(s). |