- Evo_source
- “Evo_source” column indicates that whether this record is a known precursor miRNA (pre-mir) from miRBase 13.0, an orthologous pre-mir highly similar to pre-mirs from other species or a paralogous pre-mir highly similar to pre-mirs from own species.
- Species_No
- In “Species_No” column, the value “a/b” indicates that a out of 86 (22+34+30) species are known to encode this pre-mir class and b out of 86 species are known or predicted to encode this pre-miR class.
- Distribution
- In “Distribution” column, the value “c/d” indicates that c pre-mirs in this own species belong to this pre-mir class and that d pre-mirs in all 86 (22+34+30) species belong to this pre-mir class.
Index | ID | Species | Mature miRNA (MatMiR) |
Match/ MatMiR Length |
Chrom | Strand | MatMiR Position |
PreMir Position |
Confidence | Evo_ Source |
Species_ No |
Distribution |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | aga-mir-125 | Anopheles gambiae | aga-miR-125 | 22/22 | chr3R | - | 30-51 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
2 | ame-mir-125 | Apis mellifera | ame-miR-125 | 22/22 | Group8.27 | + | 24-45 | N/A | - | miRBase_13_0 | 45/62 | 1/195 |
3 | age-mir-125b-1 | Ateles geoffroyi | age-miR-125b | 22/22 | N/A | N/A | 15-36 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
4 | age-mir-125b-2 | Ateles geoffroyi | age-miR-125b | 22/22 | N/A | N/A | 17-38 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
5 | bta-mir-125a | Bos taurus | bta-miR-125a | 23/23 | chr18 | + | 15-37 | N/A | - | miRBase_13_0 | 45/62 | 5/195 |
6 | bta-mir-125b-1 | Bos taurus | bta-miR-125b | 22/22 | chr15 | - | 15-36 | N/A | - | miRBase_13_0 | 45/62 | 5/195 |
7 | bta-mir-125b-2 | Bos taurus | bta-miR-125b | 22/22 | chr1 | - | 13-34 | N/A | - | miRBase_13_0 | 45/62 | 5/195 |
8 | bfl-mir-125 | Branchiostoma floridae | bfl-miR-125 | 22/22 | Bf_V2_28 | + | 22-43 | N/A | - | miRBase_13_0 | 45/62 | 6/195 |
9 | bfl-mir-125b-as | Branchiostoma floridae | bfl-miR-125b-as | 22/22 | Bf_V2_28 | - | 55-76 | N/A | - | miRBase_13_0 | 45/62 | 6/195 |
10 | cfa-mir-125a | Canis familiaris | cfa-miR-125a | 22/22 | chr1 | - | 1-22 | N/A | - | miRBase_13_0 | 45/62 | 5/195 |
11 | cfa-mir-125b-1 | Canis familiaris | cfa-miR-125b | 22/22 | chr5 | + | 1-22 | N/A | - | miRBase_13_0 | 45/62 | 5/195 |
12 | cfa-mir-125b-2 | Canis familiaris | cfa-miR-125b | 22/22 | chr31 | + | 1-22 | N/A | - | miRBase_13_0 | 45/62 | 5/195 |
13 | cap-mir-125 | Capitella sp. | cap-miR-125 | 22/22 | scaffold_135 | + | 22-43 | N/A | - | miRBase_13_0 | 45/62 | 1/195 |
14 | dre-mir-125a-1 | Danio rerio | dre-miR-125a | 22/22 | chr16 | + | 14-35 | N/A | - | miRBase_13_0 | 45/62 | 9/195 |
15 | dre-mir-125a-2 | Danio rerio | dre-miR-125a | 22/22 | chr19 | + | 29-50 | N/A | - | miRBase_13_0 | 45/62 | 9/195 |
16 | dre-mir-125b-1 | Danio rerio | dre-miR-125b | 22/22 | chr15 | + | 46-67 | N/A | - | miRBase_13_0 | 45/62 | 9/195 |
17 | dre-mir-125b-2 | Danio rerio | dre-miR-125b | 22/22 | chr5 | + | 14-35 | N/A | - | miRBase_13_0 | 45/62 | 9/195 |
18 | dre-mir-125b-3 | Danio rerio | dre-miR-125b | 22/22 | chr10 | - | 31-52 | N/A | - | miRBase_13_0 | 45/62 | 9/195 |
19 | dre-mir-125c | Danio rerio | dre-miR-125c | 22/22 | chr15 | - | 14-35 | N/A | - | miRBase_13_0 | 45/62 | 9/195 |
20 | dan-mir-125 | Drosophila ananassae | dan-miR-125 | 22/22 | N/A | N/A | 29-50 | N/A | - | miRBase_13_0 | 45/62 | 1/195 |
21 | der-mir-125 | Drosophila erecta | der-miR-125 | 22/22 | N/A | N/A | 29-50 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
22 | dgr-mir-125-1 | Drosophila grimshawi | dgr-miR-125 | 22/22 | N/A | N/A | 29-50 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
23 | dgr-mir-125-2 | Drosophila grimshawi | dgr-miR-125 | 22/22 | N/A | N/A | 29-50 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
24 | dme-mir-125 | Drosophila melanogaster | dme-miR-125 | 22/22 | chr2L | + | 29-50 | N/A | - | miRBase_13_0 | 45/62 | 1/195 |
25 | dmo-mir-125 | Drosophila mojavensis | dmo-miR-125 | 22/22 | N/A | N/A | 29-50 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
26 | dpe-mir-125-1 | Drosophila persimilis | dpe-miR-125 | 22/22 | N/A | N/A | 29-50 | N/A | - | miRBase_13_0 | 45/62 | 6/195 |
27 | dpe-mir-125-2 | Drosophila persimilis | dpe-miR-125 | 22/22 | N/A | N/A | 29-50 | N/A | - | miRBase_13_0 | 45/62 | 6/195 |
28 | dpe-mir-125-3 | Drosophila persimilis | dpe-miR-125 | 22/22 | N/A | N/A | 29-50 | N/A | - | miRBase_13_0 | 45/62 | 6/195 |
29 | dps-mir-125 | Drosophila pseudoobscura | dps-miR-125 | 22/22 | chr4_group3 | + | 29-50 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
30 | dse-mir-125 | Drosophila sechellia | dse-miR-125 | 22/22 | N/A | N/A | 29-50 | N/A | - | miRBase_13_0 | 45/62 | 1/195 |
31 | dsi-mir-125 | Drosophila simulans | dsi-miR-125 | 22/22 | N/A | N/A | 29-50 | N/A | - | miRBase_13_0 | 45/62 | 1/195 |
32 | dvi-mir-125 | Drosophila virilis | dvi-miR-125 | 22/22 | N/A | N/A | 29-50 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
33 | dwi-mir-125 | Drosophila willistoni | dwi-miR-125 | 22/22 | N/A | N/A | 29-50 | N/A | - | miRBase_13_0 | 45/62 | 1/195 |
34 | dya-mir-125 | Drosophila yakuba | dya-miR-125 | 22/22 | N/A | N/A | 29-50 | N/A | - | miRBase_13_0 | 45/62 | 1/195 |
35 | fru-mir-125a | Fugu rubripes | fru-miR-125a | 22/22 | scaffold_37 | - | 9-30 | N/A | - | miRBase_13_0 | 45/62 | 4/195 |
36 | fru-mir-125b | Fugu rubripes | fru-miR-125b | 22/22 | scaffold_6 | + | 8-29 | N/A | - | miRBase_13_0 | 45/62 | 4/195 |
37 | gga-mir-125b | Gallus gallus | gga-miR-125b | 22/22 | chr1 | + | 17-38 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
38 | ggo-mir-125b-1 | Gorilla gorilla | ggo-miR-125b | 22/22 | N/A | N/A | 15-36 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
39 | ggo-mir-125b-2 | Gorilla gorilla | ggo-miR-125b | 22/22 | N/A | N/A | 17-38 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
40 | hsa-mir-125a | Homo sapiens | hsa-miR-125a-3p | 22/22 | chr19 | + | 53-74 | 56888319-56888404 | - | miRBase_13_0 | 45/62 | 5/195 |
41 | hsa-mir-125a | Homo sapiens | hsa-miR-125a-5p | 24/24 | chr19 | + | 15-38 | 56888319-56888404 | - | miRBase_13_0 | 45/62 | 5/195 |
42 | hsa-mir-125b-1 | Homo sapiens | hsa-miR-125b | 22/22 | chr11 | - | 15-36 | 121475675-121475762 | - | miRBase_13_0 | 45/62 | 5/195 |
43 | hsa-mir-125b-1 | Homo sapiens | hsa-miR-125b-1* | 22/22 | chr11 | - | 55-76 | 121475675-121475762 | - | miRBase_13_0 | 45/62 | 5/195 |
44 | hsa-mir-125b-2 | Homo sapiens | hsa-miR-125b | 22/22 | chr21 | + | 17-38 | 16884428-16884516 | - | miRBase_13_0 | 45/62 | 5/195 |
45 | hsa-mir-125b-2 | Homo sapiens | hsa-miR-125b-2* | 22/22 | chr21 | + | 54-75 | 16884428-16884516 | - | miRBase_13_0 | 45/62 | 5/195 |
46 | lla-mir-125b-1 | Lagothrix lagotricha | lla-miR-125b | 22/22 | N/A | N/A | 15-36 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
47 | lla-mir-125b-2 | Lagothrix lagotricha | lla-miR-125b | 22/22 | N/A | N/A | 17-38 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
48 | lca-mir-125b | Lemur catta | lca-miR-125b | 22/22 | N/A | N/A | 17-38 | N/A | - | miRBase_13_0 | 45/62 | 1/195 |
49 | mml-mir-125a | Macaca mulatta | mml-miR-125a-3p | 22/22 | chr19 | + | 53-74 | N/A | - | miRBase_13_0 | 45/62 | 6/195 |
50 | mml-mir-125a | Macaca mulatta | mml-miR-125a-5p | 24/24 | chr19 | + | 15-38 | N/A | - | miRBase_13_0 | 45/62 | 6/195 |
51 | mml-mir-125b-1 | Macaca mulatta | mml-miR-125b | 22/22 | chr14 | - | 15-36 | N/A | - | miRBase_13_0 | 45/62 | 6/195 |
52 | mml-mir-125b-2 | Macaca mulatta | mml-miR-125b | 22/22 | chr3 | - | 17-38 | N/A | - | miRBase_13_0 | 45/62 | 6/195 |
53 | mne-mir-125b-1 | Macaca nemestrina | mne-miR-125b | 22/22 | N/A | N/A | 15-36 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
54 | mne-mir-125b-2 | Macaca nemestrina | mne-miR-125b | 22/22 | N/A | N/A | 17-38 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
55 | mdo-mir-125b-1 | Monodelphis domestica | mdo-miR-125b | 22/22 | chr4 | + | 12-33 | N/A | - | miRBase_13_0 | 45/62 | 5/195 |
56 | mdo-mir-125b-2 | Monodelphis domestica | mdo-miR-125b | 22/22 | chr4 | + | 3-24 | N/A | - | miRBase_13_0 | 45/62 | 5/195 |
57 | mmu-mir-125a | Mus musculus | mmu-miR-125a-5p | 24/24 | chr17 | + | 6-29 | N/A | - | miRBase_13_0 | 45/62 | 5/195 |
58 | mmu-mir-125a | Mus musculus | mmu-miR-125a-3p | 22/22 | chr17 | + | 44-65 | N/A | - | miRBase_13_0 | 45/62 | 5/195 |
59 | mmu-mir-125b-1 | Mus musculus | mmu-miR-125b-5p | 22/22 | chr9 | + | 15-36 | N/A | - | miRBase_13_0 | 45/62 | 5/195 |
60 | mmu-mir-125b-1 | Mus musculus | mmu-miR-125b-3p | 22/22 | chr9 | + | 55-76 | N/A | - | miRBase_13_0 | 45/62 | 5/195 |
61 | mmu-mir-125b-2 | Mus musculus | mmu-miR-125b-5p | 22/22 | chr16 | + | 7-28 | N/A | - | miRBase_13_0 | 45/62 | 5/195 |
62 | mmu-mir-125b-2 | Mus musculus | mmu-miR-125b* | 22/22 | chr16 | + | 46-67 | N/A | - | miRBase_13_0 | 45/62 | 5/195 |
63 | oan-mir-125 | Ornithorhynchus anatinus | oan-miR-125 | 22/22 | Contig534 | + | 29-50 | N/A | - | miRBase_13_0 | 45/62 | 4/195 |
64 | oan-mir-125 | Ornithorhynchus anatinus | oan-miR-125* | 21/21 | Contig534 | + | 69-89 | N/A | - | miRBase_13_0 | 45/62 | 4/195 |
65 | ppa-mir-125b | Pan paniscus | ppa-miR-125b | 22/22 | N/A | N/A | 15-36 | N/A | - | miRBase_13_0 | 45/62 | 1/195 |
66 | ptr-mir-125a | Pan troglodytes | ptr-miR-125a | 22/22 | chr19 | + | 52-73 | N/A | - | miRBase_13_0 | 45/62 | 5/195 |
67 | ptr-mir-125b-1 | Pan troglodytes | ptr-miR-125b | 22/22 | chr11 | - | 15-36 | N/A | - | miRBase_13_0 | 45/62 | 5/195 |
68 | ptr-mir-125b-2 | Pan troglodytes | ptr-miR-125b | 22/22 | chr21 | + | 17-38 | N/A | - | miRBase_13_0 | 45/62 | 5/195 |
69 | ppy-mir-125b-1 | Pongo pygmaeus | ppy-miR-125b | 22/22 | N/A | N/A | 15-36 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
70 | ppy-mir-125b-2 | Pongo pygmaeus | ppy-miR-125b | 22/22 | N/A | N/A | 17-38 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
71 | rno-mir-125a | Rattus norvegicus | rno-miR-125a-3p | 22/22 | chr1 | + | 53-74 | N/A | - | miRBase_13_0 | 45/62 | 7/195 |
72 | rno-mir-125a | Rattus norvegicus | rno-miR-125a-5p | 24/24 | chr1 | + | 15-38 | N/A | - | miRBase_13_0 | 45/62 | 7/195 |
73 | rno-mir-125b-1 | Rattus norvegicus | rno-miR-125b-5p | 22/22 | chr8 | + | 15-36 | N/A | - | miRBase_13_0 | 45/62 | 7/195 |
74 | rno-mir-125b-1 | Rattus norvegicus | rno-miR-125b-3p | 22/22 | chr8 | + | 55-76 | N/A | - | miRBase_13_0 | 45/62 | 7/195 |
75 | rno-mir-125b-2 | Rattus norvegicus | rno-miR-125b* | 22/22 | chr11 | + | 56-77 | N/A | - | miRBase_13_0 | 45/62 | 7/195 |
76 | rno-mir-125b-2 | Rattus norvegicus | rno-miR-125b-5p | 22/22 | chr11 | + | 17-38 | N/A | - | miRBase_13_0 | 45/62 | 7/195 |
77 | sko-mir-125 | Saccoglossus kowalevskii | sko-miR-125 | 22/22 | N/A | N/A | 22-43 | N/A | - | miRBase_13_0 | 45/62 | 1/195 |
78 | sla-mir-125b | Saguinus labiatus | sla-miR-125b | 22/22 | N/A | N/A | 15-36 | N/A | - | miRBase_13_0 | 45/62 | 1/195 |
79 | sja-mir-125a | Schistosoma japonicum | sja-miR-125a | 22/22 | N/A | N/A | 3-24 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
80 | sja-mir-125b | Schistosoma japonicum | sja-miR-125b | 22/22 | N/A | N/A | 2-23 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
81 | sma-mir-125a | Schistosoma mansoni | sma-miR-125a | 22/22 | N/A | N/A | 3-24 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
82 | sma-mir-125b | Schistosoma mansoni | sma-miR-125b | 22/22 | N/A | N/A | 2-23 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
83 | sme-mir-125a | Schmidtea mediterranea | sme-miR-125a | 22/22 | Contig2008.1 | + | 19-40 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
84 | sme-mir-125a | Schmidtea mediterranea | sme-miR-125a* | 20/20 | Contig2008.1 | + | 58-77 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
85 | sme-mir-125b | Schmidtea mediterranea | sme-miR-125b | 22/22 | Contig25124.1 | + | 16-37 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
86 | spu-mir-125 | Strongylocentrotus purpuratus | spu-miR-125 | 22/22 | N/A | N/A | 22-43 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
87 | ssc-mir-125b | Sus scrofa | ssc-miR-125b | 22/22 | N/A | N/A | 17-38 | N/A | - | miRBase_13_0 | 45/62 | 1/195 |
88 | tni-mir-125a | Tetraodon nigroviridis | tni-miR-125a | 22/22 | chr21_random | + | 6-27 | N/A | - | miRBase_13_0 | 45/62 | 5/195 |
89 | tni-mir-125b | Tetraodon nigroviridis | tni-miR-125b | 22/22 | chr7 | - | 14-35 | N/A | - | miRBase_13_0 | 45/62 | 5/195 |
90 | tca-mir-125 | Tribolium castaneum | tca-miR-125 | 22/22 | CM000281.1 | + | 11-32 | N/A | - | miRBase_13_0 | 45/62 | 2/195 |
91 | xtr-mir-125a | Xenopus tropicalis | xtr-miR-125a | 22/22 | scaffold_325 | + | 2-23 | N/A | - | miRBase_13_0 | 45/62 | 4/195 |
92 | xtr-mir-125b-1 | Xenopus tropicalis | xtr-miR-125b | 22/22 | scaffold_124 | + | 15-36 | N/A | - | miRBase_13_0 | 45/62 | 4/195 |
93 | xtr-mir-125b-2 | Xenopus tropicalis | xtr-miR-125b | 22/22 | scaffold_475 | + | 13-34 | N/A | - | miRBase_13_0 | 45/62 | 4/195 |
Total | 93 record(s). |