- Evo_source
- “Evo_source” column indicates that whether this record is a known precursor miRNA (pre-mir) from miRBase 13.0, an orthologous pre-mir highly similar to pre-mirs from other species or a paralogous pre-mir highly similar to pre-mirs from own species.
- Species_No
- In “Species_No” column, the value “a/b” indicates that a out of 86 (22+34+30) species are known to encode this pre-mir class and b out of 86 species are known or predicted to encode this pre-miR class.
- Distribution
- In “Distribution” column, the value “c/d” indicates that c pre-mirs in this own species belong to this pre-mir class and that d pre-mirs in all 86 (22+34+30) species belong to this pre-mir class.
Index | ID | Species | Mature miRNA (MatMiR) |
Match/ MatMiR Length |
Chrom | Strand | MatMiR Position |
PreMir Position |
Confidence | Evo_ Source |
Species_ No |
Distribution |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | anoCar1-20 | Anolis carolinensis | cfa-miR-139 | 20/22 | scaffold_1104 | - | 49-70 | 186692-186774 | 0.999693 | Ortholog | 13/28 | 1/30 |
2 | anoCar1-20 | Anolis carolinensis | bta-miR-139 | 22/23 | scaffold_1104 | - | 14-36 | 186691-186775 | 0.999953 | Ortholog | 13/28 | 1/30 |
3 | anoCar1-20 | Anolis carolinensis | dre-miR-139 | 18/18 | scaffold_1104 | - | 12-29 | 186693-186773 | 0.999969 | Ortholog | 13/28 | 1/30 |
4 | bta-mir-139 | Bos taurus | bta-miR-139 | 23/23 | chr15 | - | 7-29 | N/A | - | miRBase_13_0 | 13/28 | 1/30 |
5 | calJac1-450 | Callithrix jacchus | oan-miR-139 | 21/22 | Contig409 | + | 14-35 | 299887-299969 | 0.998715 | Ortholog | 13/28 | 1/30 |
6 | calJac1-450 | Callithrix jacchus | bta-miR-139 | 23/23 | Contig409 | + | 14-36 | 299888-299970 | 0.997775 | Ortholog | 13/28 | 1/30 |
7 | cfa-mir-139 | Canis familiaris | cfa-miR-139 | 22/22 | chr21 | + | 36-57 | N/A | - | miRBase_13_0 | 13/28 | 1/30 |
8 | cavPor3-54 | Cavia porcellus | oan-miR-139 | 21/22 | scaffold_103 | + | 10-31 | 2790714-2790789 | 0.998314 | Ortholog | 13/28 | 1/30 |
9 | cavPor3-54 | Cavia porcellus | ssc-miR-139 | 18/18 | scaffold_103 | + | 10-27 | 2790714-2790789 | 0.999565 | Ortholog | 13/28 | 1/30 |
10 | cavPor3-54 | Cavia porcellus | mmu-miR-139-3p | 22/22 | scaffold_103 | + | 50-71 | 2790710-2790794 | 0.905912 | Ortholog | 13/28 | 1/30 |
11 | cavPor3-54 | Cavia porcellus | hsa-miR-139-3p | 22/22 | scaffold_103 | + | 51-72 | 2790710-2790794 | 0.905912 | Ortholog | 13/28 | 1/30 |
12 | cavPor3-54 | Cavia porcellus | cfa-miR-139 | 21/22 | scaffold_103 | + | 50-70 | 2790710-2790794 | 0.937999 | Ortholog | 13/28 | 1/30 |
13 | dre-mir-139 | Danio rerio | dre-miR-139 | 18/18 | Zv7_NA5105 | - | 7-24 | N/A | - | miRBase_13_0 | 13/28 | 1/30 |
14 | droYak2-172 | Drosophila yakuba | ssc-miR-139 | 16/18 | chrX_random | - | 20-35 | 1060995-1061082 | 0.959699 | Ortholog | 13/28 | 1/30 |
15 | equCab1-548 | Equus caballus | mmu-miR-139-3p | 22/22 | chr7 | + | 50-71 | 58890212-58890296 | 0.949173 | Ortholog | 13/28 | 1/30 |
16 | equCab1-548 | Equus caballus | oan-miR-139 | 21/22 | chr7 | + | 12-33 | 58890214-58890294 | 0.9994 | Ortholog | 13/28 | 1/30 |
17 | equCab1-548 | Equus caballus | cfa-miR-139 | 21/22 | chr7 | + | 50-70 | 58890212-58890296 | 0.968728 | Ortholog | 13/28 | 1/30 |
18 | equCab1-548 | Equus caballus | bta-miR-139 | 23/23 | chr7 | + | 13-35 | 58890213-58890295 | 0.999673 | Ortholog | 13/28 | 1/30 |
19 | equCab1-548 | Equus caballus | hsa-miR-139-3p | 22/22 | chr7 | + | 51-72 | 58890212-58890296 | 0.949173 | Ortholog | 13/28 | 1/30 |
20 | equCab1-548 | Equus caballus | ssc-miR-139 | 18/18 | chr7 | + | 11-28 | 58890215-58890292 | 0.999796 | Ortholog | 13/28 | 1/30 |
21 | felCat3-43 | Felis catus | hsa-miR-139-3p | 22/22 | scaffold_135421 | - | 49-70 | 104702-104782 | 0.858827 | Ortholog | 13/28 | 1/30 |
22 | felCat3-43 | Felis catus | mmu-miR-139-3p | 22/22 | scaffold_135421 | - | 49-70 | 104701-104783 | 0.806703 | Ortholog | 13/28 | 1/30 |
23 | felCat3-43 | Felis catus | bta-miR-139 | 23/23 | scaffold_135421 | - | 13-35 | 104700-104784 | 0.998553 | Ortholog | 13/28 | 1/30 |
24 | felCat3-43 | Felis catus | oan-miR-139 | 21/22 | scaffold_135421 | - | 14-35 | 104700-104784 | 0.997097 | Ortholog | 13/28 | 1/30 |
25 | felCat3-43 | Felis catus | cfa-miR-139 | 21/22 | scaffold_135421 | - | 50-70 | 104700-104784 | 0.848498 | Ortholog | 13/28 | 1/30 |
26 | fr2-106 | Fugu rubripes | dre-miR-139 | 18/18 | chrUn | + | 8-25 | 212329922-212329996 | 0.999266 | Ortholog | 13/28 | 1/30 |
27 | fr2-106 | Fugu rubripes | bta-miR-139 | 22/23 | chrUn | + | 11-33 | 212329919-212329999 | 0.999293 | Ortholog | 13/28 | 1/30 |
28 | fr2-106 | Fugu rubripes | oan-miR-139 | 22/22 | chrUn | + | 10-31 | 212329920-212329998 | 0.998633 | Ortholog | 13/28 | 1/30 |
29 | fr2-106 | Fugu rubripes | oan-miR-139* | 20/22 | chrUn | + | 51-71 | 212329918-212330000 | 0.99755 | Ortholog | 13/28 | 1/30 |
30 | gasAcu1-17 | Gasterosteus aculeatus | oan-miR-139* | 20/22 | chrI | - | 50-70 | 6030574-6030654 | 0.997917 | Ortholog | 13/28 | 2/30 |
31 | gasAcu1-17 | Gasterosteus aculeatus | dre-miR-139 | 18/18 | chrI | - | 10-27 | 6030575-6030653 | 0.999309 | Ortholog | 13/28 | 2/30 |
32 | gasAcu1-17 | Gasterosteus aculeatus | bta-miR-139 | 22/23 | chrI | - | 12-34 | 6030573-6030655 | 0.998717 | Ortholog | 13/28 | 2/30 |
33 | gasAcu1-17 | Gasterosteus aculeatus | oan-miR-139 | 22/22 | chrI | - | 12-33 | 6030573-6030655 | 0.997768 | Ortholog | 13/28 | 2/30 |
34 | gasAcu1-274 | Gasterosteus aculeatus | mmu-miR-139-3p | 20/22 | chrUn | + | 16-37 | 57339340-57339424 | 0.921233 | Ortholog | 13/28 | 2/30 |
35 | hsa-mir-139 | Homo sapiens | hsa-miR-139-3p | 22/22 | chr11 | - | 44-65 | 72003755-72003822 | - | miRBase_13_0 | 13/28 | 1/30 |
36 | hsa-mir-139 | Homo sapiens | hsa-miR-139-5p | 22/22 | chr11 | - | 7-28 | 72003755-72003822 | - | miRBase_13_0 | 13/28 | 1/30 |
37 | lla-mir-139 | Lagothrix lagotricha | lla-miR-139 | 18/18 | N/A | N/A | 7-24 | N/A | - | miRBase_13_0 | 13/28 | 1/30 |
38 | loxAfr1-228 | Loxodonta africana | oan-miR-139* | 20/22 | scaffold_4026 | + | 51-71 | N/A | 0.858972 | Ortholog | 13/28 | 2/30 |
39 | loxAfr1-364 | Loxodonta africana | hsa-miR-139-3p | 22/22 | scaffold_68486 | + | 51-72 | N/A | 0.882605 | Ortholog | 13/28 | 2/30 |
40 | loxAfr1-364 | Loxodonta africana | bta-miR-139 | 23/23 | scaffold_68486 | + | 13-35 | N/A | 0.99937 | Ortholog | 13/28 | 2/30 |
41 | loxAfr1-364 | Loxodonta africana | cfa-miR-139 | 21/22 | scaffold_68486 | + | 50-70 | N/A | 0.925765 | Ortholog | 13/28 | 2/30 |
42 | loxAfr1-364 | Loxodonta africana | oan-miR-139 | 21/22 | scaffold_68486 | + | 12-33 | N/A | 0.998802 | Ortholog | 13/28 | 2/30 |
43 | loxAfr1-364 | Loxodonta africana | mmu-miR-139-3p | 22/22 | scaffold_68486 | + | 50-71 | N/A | 0.882605 | Ortholog | 13/28 | 2/30 |
44 | mml-mir-139 | Macaca mulatta | mml-miR-139-5p | 22/22 | chr14 | - | 7-28 | N/A | - | miRBase_13_0 | 13/28 | 1/30 |
45 | mml-mir-139 | Macaca mulatta | mml-miR-139-3p | 22/22 | chr14 | - | 44-65 | N/A | - | miRBase_13_0 | 13/28 | 1/30 |
46 | monDom4-303 | Monodelphis domestica | bta-miR-139 | 22/23 | chr4 | + | 13-35 | 344017571-344017653 | 0.999526 | Ortholog | 13/28 | 1/30 |
47 | monDom4-303 | Monodelphis domestica | oan-miR-139 | 22/22 | chr4 | + | 10-31 | 344017574-344017649 | 0.998858 | Ortholog | 13/28 | 1/30 |
48 | mmu-mir-139 | Mus musculus | mmu-miR-139-5p | 22/22 | chr7 | + | 7-28 | N/A | - | miRBase_13_0 | 13/28 | 1/30 |
49 | mmu-mir-139 | Mus musculus | mmu-miR-139-3p | 22/22 | chr7 | + | 43-64 | N/A | - | miRBase_13_0 | 13/28 | 1/30 |
50 | oan-mir-139 | Ornithorhynchus anatinus | oan-miR-139* | 22/22 | Contig13261 | - | 52-73 | N/A | - | miRBase_13_0 | 13/28 | 1/30 |
51 | oan-mir-139 | Ornithorhynchus anatinus | oan-miR-139 | 22/22 | Contig13261 | - | 16-37 | N/A | - | miRBase_13_0 | 13/28 | 1/30 |
52 | oryCun1-235 | Oryctolagus cuniculus | hsa-miR-139-3p | 22/22 | scaffold_193491 | - | 49-70 | N/A | 0.953657 | Ortholog | 13/28 | 1/30 |
53 | oryCun1-235 | Oryctolagus cuniculus | mmu-miR-139-3p | 22/22 | scaffold_193491 | - | 49-70 | N/A | 0.940771 | Ortholog | 13/28 | 1/30 |
54 | oryCun1-235 | Oryctolagus cuniculus | cfa-miR-139 | 21/22 | scaffold_193491 | - | 50-70 | N/A | 0.956998 | Ortholog | 13/28 | 1/30 |
55 | oryCun1-235 | Oryctolagus cuniculus | oan-miR-139 | 21/22 | scaffold_193491 | - | 14-35 | N/A | 0.999184 | Ortholog | 13/28 | 1/30 |
56 | oryCun1-235 | Oryctolagus cuniculus | bta-miR-139 | 23/23 | scaffold_193491 | - | 14-36 | N/A | 0.99959 | Ortholog | 13/28 | 1/30 |
57 | oryLat2-77 | Oryzias latipes | oan-miR-139 | 22/22 | chr13 | + | 10-31 | 21690239-21690317 | 0.998204 | Ortholog | 13/28 | 1/30 |
58 | oryLat2-77 | Oryzias latipes | dre-miR-139 | 18/18 | chr13 | + | 21-38 | 21690228-21690311 | 0.997207 | Ortholog | 13/28 | 1/30 |
59 | oryLat2-77 | Oryzias latipes | cfa-miR-139 | 20/22 | chr13 | + | 51-72 | 21690237-21690319 | 0.996601 | Ortholog | 13/28 | 1/30 |
60 | oryLat2-77 | Oryzias latipes | bta-miR-139 | 22/23 | chr13 | + | 11-33 | 21690238-21690318 | 0.99945 | Ortholog | 13/28 | 1/30 |
61 | ppa-mir-139 | Pan paniscus | ppa-miR-139 | 18/18 | N/A | N/A | 7-24 | N/A | - | miRBase_13_0 | 13/28 | 1/30 |
62 | ptr-mir-139 | Pan troglodytes | ptr-miR-139 | 22/22 | chr11 | - | 44-65 | N/A | - | miRBase_13_0 | 13/28 | 1/30 |
63 | ponAbe2-117 | Pongo abelii | hsa-miR-139-3p | 22/22 | chr11 | - | 49-70 | 67962502-67962582 | 0.919455 | Ortholog | 13/28 | 1/30 |
64 | ponAbe2-117 | Pongo abelii | mmu-miR-139-3p | 22/22 | chr11 | - | 49-70 | 67962501-67962583 | 0.898681 | Ortholog | 13/28 | 1/30 |
65 | ponAbe2-117 | Pongo abelii | cfa-miR-139 | 21/22 | chr11 | - | 50-70 | 67962500-67962584 | 0.925765 | Ortholog | 13/28 | 1/30 |
66 | ponAbe2-117 | Pongo abelii | bta-miR-139 | 23/23 | chr11 | - | 13-35 | 67962500-67962584 | 0.999359 | Ortholog | 13/28 | 1/30 |
67 | ponAbe2-117 | Pongo abelii | oan-miR-139 | 21/22 | chr11 | - | 14-35 | 67962500-67962584 | 0.998712 | Ortholog | 13/28 | 1/30 |
68 | rno-mir-139 | Rattus norvegicus | rno-miR-139-5p | 22/22 | chr1 | + | 7-28 | N/A | - | miRBase_13_0 | 13/28 | 1/30 |
69 | rno-mir-139 | Rattus norvegicus | rno-miR-139-3p | 22/22 | chr1 | + | 43-64 | N/A | - | miRBase_13_0 | 13/28 | 1/30 |
70 | ssc-mir-139 | Sus scrofa | ssc-miR-139 | 18/18 | N/A | N/A | 7-24 | N/A | - | miRBase_13_0 | 13/28 | 1/30 |
71 | taeGut1-33 | Taeniopygia guttata | dre-miR-139 | 18/18 | chr1 | - | 13-30 | 113641297-113641377 | 0.999537 | Ortholog | 13/28 | 1/30 |
72 | taeGut1-33 | Taeniopygia guttata | cfa-miR-139 | 21/22 | chr1 | - | 49-70 | 113641295-113641377 | 0.970661 | Ortholog | 13/28 | 1/30 |
73 | taeGut1-33 | Taeniopygia guttata | bta-miR-139 | 22/23 | chr1 | - | 14-36 | 113641294-113641378 | 0.999095 | Ortholog | 13/28 | 1/30 |
74 | taeGut1-33 | Taeniopygia guttata | mmu-miR-139-3p | 20/22 | chr1 | - | 50-70 | 113641294-113641378 | 0.922466 | Ortholog | 13/28 | 1/30 |
75 | taeGut1-33 | Taeniopygia guttata | oan-miR-139 | 22/22 | chr1 | - | 14-35 | 113641294-113641378 | 0.998552 | Ortholog | 13/28 | 1/30 |
76 | tetNig1-326 | Tetraodon nigroviridis | bta-miR-139 | 22/23 | chrUn_random | - | 12-34 | 122030151-122030233 | 0.998717 | Ortholog | 13/28 | 1/30 |
77 | tetNig1-326 | Tetraodon nigroviridis | dre-miR-139 | 18/18 | chrUn_random | - | 10-27 | 122030153-122030231 | 0.999309 | Ortholog | 13/28 | 1/30 |
78 | tetNig1-326 | Tetraodon nigroviridis | oan-miR-139 | 22/22 | chrUn_random | - | 12-33 | 122030151-122030233 | 0.997768 | Ortholog | 13/28 | 1/30 |
79 | tetNig1-326 | Tetraodon nigroviridis | oan-miR-139* | 20/22 | chrUn_random | - | 50-70 | 122030152-122030232 | 0.997917 | Ortholog | 13/28 | 1/30 |
80 | xtr-mir-139 | Xenopus tropicalis | xtr-miR-139 | 18/18 | scaffold_995 | + | 6-23 | N/A | - | miRBase_13_0 | 13/28 | 1/30 |
Total | 80 record(s). |