- Evo_source
- “Evo_source” column indicates that whether this record is a known precursor miRNA (pre-mir) from miRBase 13.0, an orthologous pre-mir highly similar to pre-mirs from other species or a paralogous pre-mir highly similar to pre-mirs from own species.
- Species_No
- In “Species_No” column, the value “a/b” indicates that a out of 86 (22+34+30) species are known to encode this pre-mir class and b out of 86 species are known or predicted to encode this pre-miR class.
- Distribution
- In “Distribution” column, the value “c/d” indicates that c pre-mirs in this own species belong to this pre-mir class and that d pre-mirs in all 86 (22+34+30) species belong to this pre-mir class.
Index | ID | Species | Mature miRNA (MatMiR) |
Match/ MatMiR Length |
Chrom | Strand | MatMiR Position |
PreMir Position |
Confidence | Evo_ Source |
Species_ No |
Distribution |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | anoCar1-59 | Anolis carolinensis | xtr-miR-16c | 22/22 | scaffold_1275 | + | 7-28 | 6079-6154 | 0.936679 | Ortholog | 23/38 | 1/61 |
2 | age-mir-16 | Ateles geoffroyi | age-miR-16 | 22/22 | N/A | N/A | 14-35 | N/A | - | miRBase_13_0 | 23/38 | 1/61 |
3 | bta-mir-16a | Bos taurus | bta-miR-16a | 22/22 | chr12 | - | 14-35 | N/A | - | miRBase_13_0 | 23/38 | 2/61 |
4 | bta-mir-16b | Bos taurus | bta-miR-16b | 21/21 | chr1 | - | 17-37 | N/A | - | miRBase_13_0 | 23/38 | 2/61 |
5 | calJac1-473 | Callithrix jacchus | gga-miR-16 | 20/22 | Contig4513 | - | 9-28 | 147516-147594 | 0.921541 | Ortholog | 23/38 | 1/61 |
6 | calJac1-473 | Callithrix jacchus | bta-miR-16b | 21/21 | Contig4513 | - | 9-29 | 147516-147594 | 0.873109 | Ortholog | 23/38 | 1/61 |
7 | calJac1-473 | Callithrix jacchus | hsa-miR-16 | 22/22 | Contig4513 | - | 10-31 | 147515-147595 | 0.823239 | Ortholog | 23/38 | 1/61 |
8 | cfa-mir-16-1 | Canis familiaris | cfa-miR-16 | 22/22 | chr22 | + | 1-22 | N/A | - | miRBase_13_0 | 23/38 | 2/61 |
9 | cfa-mir-16-2 | Canis familiaris | cfa-miR-16 | 22/22 | chr34 | + | 1-22 | N/A | - | miRBase_13_0 | 23/38 | 2/61 |
10 | dre-mir-16a | Danio rerio | dre-miR-16a | 22/22 | chr15 | - | 13-34 | N/A | - | miRBase_13_0 | 23/38 | 3/61 |
11 | dre-mir-16b | Danio rerio | dre-miR-16b | 22/22 | chr1 | - | 39-60 | N/A | - | miRBase_13_0 | 23/38 | 3/61 |
12 | dre-mir-16c | Danio rerio | dre-miR-16c | 22/22 | Zv7_scaffold2573 | - | 35-56 | N/A | - | miRBase_13_0 | 23/38 | 3/61 |
13 | dasNov1-211 | Dasypus novemcinctus | gga-miR-16 | 20/22 | scaffold_3568 | - | 9-28 | N/A | 0.905817 | Ortholog | 23/38 | 1/61 |
14 | dasNov1-211 | Dasypus novemcinctus | bta-miR-16b | 21/21 | scaffold_3568 | - | 9-29 | N/A | 0.849618 | Ortholog | 23/38 | 1/61 |
15 | dasNov1-211 | Dasypus novemcinctus | hsa-miR-16 | 22/22 | scaffold_3568 | - | 10-31 | N/A | 0.816474 | Ortholog | 23/38 | 1/61 |
16 | droGri2-157 | Drosophila grimshawi | hsa-miR-16-1* | 20/22 | scaffold_15245 | + | 11-32 | N/A | 0.918302 | Ortholog | 23/38 | 1/61 |
17 | equCab1-177 | Equus caballus | gga-miR-16 | 20/22 | chr17 | + | 6-25 | 19981077-19981149 | 0.931826 | Ortholog | 23/38 | 1/61 |
18 | equCab1-177 | Equus caballus | bta-miR-16b | 21/21 | chr17 | + | 6-26 | 19981077-19981149 | 0.88957 | Ortholog | 23/38 | 1/61 |
19 | equCab1-177 | Equus caballus | hsa-miR-16 | 22/22 | chr17 | + | 6-27 | 19981077-19981149 | 0.85484 | Ortholog | 23/38 | 1/61 |
20 | eriEur1-318 | Erinaceus europaeus | hsa-miR-16-2* | 20/22 | scaffold_375962 | - | 50-70 | N/A | 0.883034 | Ortholog | 23/38 | 2/61 |
21 | eriEur1-9 | Erinaceus europaeus | gga-miR-16 | 22/22 | scaffold_156380 | - | 12-33 | N/A | 0.998229 | Ortholog | 23/38 | 2/61 |
22 | eriEur1-9 | Erinaceus europaeus | hsa-miR-16 | 20/22 | scaffold_156380 | - | 11-30 | N/A | 0.997599 | Ortholog | 23/38 | 2/61 |
23 | fr2-189 | Fugu rubripes | hsa-miR-16 | 20/22 | chrUn | - | 8-27 | 33504999-33505075 | 0.911521 | Paralog | 23/38 | 2/61 |
24 | fr2-189 | Fugu rubripes | gga-miR-16 | 22/22 | chrUn | - | 10-31 | 33504998-33505078 | 0.972526 | Paralog | 23/38 | 2/61 |
25 | fru-mir-16 | Fugu rubripes | fru-miR-16 | 22/22 | scaffold_42 | - | 13-34 | N/A | - | miRBase_13_0 | 23/38 | 2/61 |
26 | gga-mir-16-1 | Gallus gallus | gga-miR-16 | 22/22 | chr1 | - | 14-35 | N/A | - | miRBase_13_0 | 23/38 | 3/61 |
27 | gga-mir-16-2 | Gallus gallus | gga-miR-16 | 22/22 | chr9 | - | 17-38 | N/A | - | miRBase_13_0 | 23/38 | 3/61 |
28 | gga-mir-16c | Gallus gallus | gga-miR-16c | 22/22 | chr4 | - | 5-26 | N/A | - | miRBase_13_0 | 23/38 | 3/61 |
29 | gasAcu1-25 | Gasterosteus aculeatus | bta-miR-16b | 21/21 | chrI | - | 9-29 | 10096046-10096124 | 0.994119 | Ortholog | 23/38 | 1/61 |
30 | gasAcu1-25 | Gasterosteus aculeatus | hsa-miR-16 | 22/22 | chrI | - | 10-31 | 10096045-10096125 | 0.99688 | Ortholog | 23/38 | 1/61 |
31 | gasAcu1-25 | Gasterosteus aculeatus | gga-miR-16 | 20/22 | chrI | - | 9-28 | 10096046-10096124 | 0.996429 | Ortholog | 23/38 | 1/61 |
32 | ggo-mir-16 | Gorilla gorilla | ggo-miR-16 | 22/22 | N/A | N/A | 14-35 | N/A | - | miRBase_13_0 | 23/38 | 1/61 |
33 | hsa-mir-16-1 | Homo sapiens | hsa-miR-16-1* | 22/22 | chr13 | - | 56-77 | 49521110-49521198 | - | miRBase_13_0 | 23/38 | 2/61 |
34 | hsa-mir-16-1 | Homo sapiens | hsa-miR-16 | 22/22 | chr13 | - | 14-35 | 49521110-49521198 | - | miRBase_13_0 | 23/38 | 2/61 |
35 | hsa-mir-16-2 | Homo sapiens | hsa-miR-16 | 22/22 | chr3 | + | 10-31 | 161605227-161605307 | - | miRBase_13_0 | 23/38 | 2/61 |
36 | hsa-mir-16-2 | Homo sapiens | hsa-miR-16-2* | 22/22 | chr3 | + | 53-74 | 161605227-161605307 | - | miRBase_13_0 | 23/38 | 2/61 |
37 | lla-mir-16 | Lagothrix lagotricha | lla-miR-16 | 22/22 | N/A | N/A | 14-35 | N/A | - | miRBase_13_0 | 23/38 | 1/61 |
38 | lca-mir-16 | Lemur catta | lca-miR-16 | 22/22 | N/A | N/A | 14-35 | N/A | - | miRBase_13_0 | 23/38 | 1/61 |
39 | loxAfr1-229 | Loxodonta africana | dre-miR-16b | 22/22 | scaffold_40322 | + | 6-27 | N/A | 0.990577 | Ortholog | 23/38 | 1/61 |
40 | loxAfr1-229 | Loxodonta africana | gga-miR-16 | 20/22 | scaffold_40322 | + | 6-25 | N/A | 0.99348 | Ortholog | 23/38 | 1/61 |
41 | mml-mir-16-1 | Macaca mulatta | mml-miR-16 | 22/22 | chr17 | - | 14-35 | N/A | - | miRBase_13_0 | 23/38 | 2/61 |
42 | mml-mir-16-2 | Macaca mulatta | mml-miR-16 | 22/22 | chr2 | - | 10-31 | N/A | - | miRBase_13_0 | 23/38 | 2/61 |
43 | mne-mir-16 | Macaca nemestrina | mne-miR-16 | 22/22 | N/A | N/A | 14-35 | N/A | - | miRBase_13_0 | 23/38 | 1/61 |
44 | mdo-mir-16 | Monodelphis domestica | mdo-miR-16 | 22/22 | chr4 | + | 14-35 | N/A | - | miRBase_13_0 | 23/38 | 2/61 |
45 | monDom4-302 | Monodelphis domestica | mmu-miR-16* | 21/22 | chr4 | + | 51-72 | 308184820-308184901 | 0.975003 | Paralog | 23/38 | 2/61 |
46 | mm9-588 | Mus musculus | hsa-miR-16-2* | 20/22 | chrX | + | 51-72 | 130681588-130681677 | 0.972448 | Paralog | 23/38 | 3/61 |
47 | mmu-mir-16-1 | Mus musculus | mmu-miR-16 | 22/22 | chr14 | - | 16-37 | N/A | - | miRBase_13_0 | 23/38 | 3/61 |
48 | mmu-mir-16-1 | Mus musculus | mmu-miR-16* | 22/22 | chr14 | - | 58-79 | N/A | - | miRBase_13_0 | 23/38 | 3/61 |
49 | mmu-mir-16-2 | Mus musculus | mmu-miR-16 | 22/22 | chr3 | + | 17-38 | N/A | - | miRBase_13_0 | 23/38 | 3/61 |
50 | oan-mir-16a | Ornithorhynchus anatinus | oan-miR-16a | 22/22 | Ultra336 | + | 29-50 | N/A | - | miRBase_13_0 | 23/38 | 3/61 |
51 | oan-mir-16a | Ornithorhynchus anatinus | oan-miR-16a* | 22/22 | Ultra336 | + | 71-92 | N/A | - | miRBase_13_0 | 23/38 | 3/61 |
52 | oan-mir-16b | Ornithorhynchus anatinus | oan-miR-16b | 22/22 | Contig5755 | + | 21-42 | N/A | - | miRBase_13_0 | 23/38 | 3/61 |
53 | oan-mir-16b | Ornithorhynchus anatinus | oan-miR-16b* | 20/20 | Contig5755 | + | 59-78 | N/A | - | miRBase_13_0 | 23/38 | 3/61 |
54 | oan-mir-16c | Ornithorhynchus anatinus | oan-miR-16c* | 22/22 | chr6 | + | 72-93 | N/A | - | miRBase_13_0 | 23/38 | 3/61 |
55 | oan-mir-16c | Ornithorhynchus anatinus | oan-miR-16c | 22/22 | chr6 | + | 28-49 | N/A | - | miRBase_13_0 | 23/38 | 3/61 |
56 | oryCun1-314 | Oryctolagus cuniculus | hsa-miR-16 | 21/22 | scaffold_202272 | - | 10-31 | N/A | 0.829064 | Ortholog | 23/38 | 1/61 |
57 | oryLat2-216 | Oryzias latipes | mmu-miR-16* | 20/22 | chr21 | + | 50-71 | 11191908-11191981 | 0.999397 | Ortholog | 23/38 | 2/61 |
58 | oryLat2-69 | Oryzias latipes | hsa-miR-16 | 22/22 | chr13 | + | 8-29 | 12901187-12901263 | 0.988467 | Ortholog | 23/38 | 2/61 |
59 | oryLat2-69 | Oryzias latipes | xtr-miR-16b | 20/22 | chr13 | + | 7-26 | 12901188-12901262 | 0.993165 | Ortholog | 23/38 | 2/61 |
60 | oryLat2-69 | Oryzias latipes | bta-miR-16b | 21/21 | chr13 | + | 8-28 | 12901187-12901263 | 0.993027 | Ortholog | 23/38 | 2/61 |
61 | otoGar1-483 | Otolemur garnettii | bta-miR-16b | 21/21 | scaffold_98797.1-193773 | + | 6-26 | N/A | 0.88957 | Ortholog | 23/38 | 1/61 |
62 | otoGar1-483 | Otolemur garnettii | hsa-miR-16 | 22/22 | scaffold_98797.1-193773 | + | 6-27 | N/A | 0.85484 | Ortholog | 23/38 | 1/61 |
63 | otoGar1-483 | Otolemur garnettii | gga-miR-16 | 20/22 | scaffold_98797.1-193773 | + | 6-25 | N/A | 0.931826 | Ortholog | 23/38 | 1/61 |
64 | ppa-mir-16 | Pan paniscus | ppa-miR-16 | 22/22 | N/A | N/A | 14-35 | N/A | - | miRBase_13_0 | 23/38 | 1/61 |
65 | ptr-mir-16-1 | Pan troglodytes | ptr-miR-16 | 22/22 | chr13 | - | 14-35 | N/A | - | miRBase_13_0 | 23/38 | 2/61 |
66 | ptr-mir-16-2 | Pan troglodytes | ptr-miR-16 | 22/22 | chr3 | + | 9-30 | N/A | - | miRBase_13_0 | 23/38 | 2/61 |
67 | ponAbe2-175 | Pongo abelii | gga-miR-16 | 20/22 | chr13 | - | 9-28 | 50305075-50305153 | 0.921541 | Ortholog | 23/38 | 1/61 |
68 | ponAbe2-175 | Pongo abelii | hsa-miR-16 | 22/22 | chr13 | - | 10-31 | 50305074-50305154 | 0.823239 | Ortholog | 23/38 | 1/61 |
69 | ponAbe2-175 | Pongo abelii | bta-miR-16b | 21/21 | chr13 | - | 9-29 | 50305075-50305153 | 0.873109 | Ortholog | 23/38 | 1/61 |
70 | ppy-mir-16 | Pongo pygmaeus | ppy-miR-16 | 22/22 | N/A | N/A | 14-35 | N/A | - | miRBase_13_0 | 23/38 | 1/61 |
71 | rno-mir-16 | Rattus norvegicus | rno-miR-16 | 22/22 | chr2 | + | 17-38 | N/A | - | miRBase_13_0 | 23/38 | 1/61 |
72 | sla-mir-16 | Saguinus labiatus | sla-miR-16 | 22/22 | N/A | N/A | 14-35 | N/A | - | miRBase_13_0 | 23/38 | 1/61 |
73 | sorAra1-135 | Sorex araneus | gga-miR-16 | 20/22 | scaffold_244108 | - | 9-28 | N/A | 0.971721 | Ortholog | 23/38 | 2/61 |
74 | sorAra1-135 | Sorex araneus | hsa-miR-16 | 22/22 | scaffold_244108 | - | 8-29 | N/A | 0.96249 | Ortholog | 23/38 | 2/61 |
75 | sorAra1-135 | Sorex araneus | mmu-miR-16* | 21/22 | scaffold_244108 | - | 49-70 | N/A | 0.9944 | Ortholog | 23/38 | 2/61 |
76 | sorAra1-135 | Sorex araneus | bta-miR-16b | 21/21 | scaffold_244108 | - | 9-29 | N/A | 0.954631 | Ortholog | 23/38 | 2/61 |
77 | sorAra1-6 | Sorex araneus | gga-miR-16 | 20/22 | scaffold_129962 | - | 9-28 | N/A | 0.907903 | Ortholog | 23/38 | 2/61 |
78 | sorAra1-6 | Sorex araneus | bta-miR-16b | 21/21 | scaffold_129962 | - | 9-29 | N/A | 0.853285 | Ortholog | 23/38 | 2/61 |
79 | sorAra1-6 | Sorex araneus | hsa-miR-16 | 22/22 | scaffold_129962 | - | 10-31 | N/A | 0.825358 | Ortholog | 23/38 | 2/61 |
80 | ssc-mir-16-1 | Sus scrofa | ssc-miR-16 | 22/22 | chr11 | + | 9-30 | N/A | - | miRBase_13_0 | 23/38 | 2/61 |
81 | ssc-mir-16-2 | Sus scrofa | ssc-miR-16 | 22/22 | chr13 | + | 8-29 | N/A | - | miRBase_13_0 | 23/38 | 2/61 |
82 | taeGut1-324 | Taeniopygia guttata | gga-miR-16 | 20/22 | chr9 | - | 10-29 | 25555825-25555904 | 0.994751 | Ortholog | 23/38 | 2/61 |
83 | taeGut1-324 | Taeniopygia guttata | oan-miR-16b* | 20/20 | chr9 | - | 50-69 | 25555823-25555903 | 0.997904 | Ortholog | 23/38 | 2/61 |
84 | taeGut1-324 | Taeniopygia guttata | dre-miR-16b | 22/22 | chr9 | - | 9-30 | 25555824-25555903 | 0.984163 | Ortholog | 23/38 | 2/61 |
85 | taeGut1-9 | Taeniopygia guttata | mmu-miR-16* | 21/22 | chr1 | + | 51-72 | 55910032-55910113 | 0.997062 | Ortholog | 23/38 | 2/61 |
86 | tetNig1-75 | Tetraodon nigroviridis | gga-miR-16 | 20/22 | chr16 | - | 9-28 | 2089589-2089667 | 0.916488 | Paralog | 23/38 | 2/61 |
87 | tetNig1-75 | Tetraodon nigroviridis | bta-miR-16b | 21/21 | chr16 | - | 9-29 | 2089589-2089667 | 0.866064 | Paralog | 23/38 | 2/61 |
88 | tetNig1-75 | Tetraodon nigroviridis | hsa-miR-16 | 22/22 | chr16 | - | 10-31 | 2089588-2089668 | 0.837578 | Paralog | 23/38 | 2/61 |
89 | tni-mir-16 | Tetraodon nigroviridis | tni-miR-16 | 22/22 | chr2 | + | 1-22 | N/A | - | miRBase_13_0 | 23/38 | 2/61 |
90 | tupBel1-301 | Tupaia belangeri | gga-miR-16 | 20/22 | scaffold_128803.1-464763 | + | 6-25 | N/A | 0.931826 | Ortholog | 23/38 | 1/61 |
91 | tupBel1-301 | Tupaia belangeri | hsa-miR-16 | 22/22 | scaffold_128803.1-464763 | + | 6-27 | N/A | 0.85484 | Ortholog | 23/38 | 1/61 |
92 | tupBel1-301 | Tupaia belangeri | bta-miR-16b | 21/21 | scaffold_128803.1-464763 | + | 6-26 | N/A | 0.88957 | Ortholog | 23/38 | 1/61 |
93 | xtr-mir-16a | Xenopus tropicalis | xtr-miR-16a | 22/22 | scaffold_167 | - | 14-35 | N/A | - | miRBase_13_0 | 23/38 | 3/61 |
94 | xtr-mir-16b | Xenopus tropicalis | xtr-miR-16b | 22/22 | scaffold_50 | - | 14-35 | N/A | - | miRBase_13_0 | 23/38 | 3/61 |
95 | xtr-mir-16c | Xenopus tropicalis | xtr-miR-16c | 22/22 | scaffold_31 | - | 3-24 | N/A | - | miRBase_13_0 | 23/38 | 3/61 |
Total | 95 record(s). |