- Evo_source
- “Evo_source” column indicates that whether this record is a known precursor miRNA (pre-mir) from miRBase 13.0, an orthologous pre-mir highly similar to pre-mirs from other species or a paralogous pre-mir highly similar to pre-mirs from own species.
- Species_No
- In “Species_No” column, the value “a/b” indicates that a out of 86 (22+34+30) species are known to encode this pre-mir class and b out of 86 species are known or predicted to encode this pre-miR class.
- Distribution
- In “Distribution” column, the value “c/d” indicates that c pre-mirs in this own species belong to this pre-mir class and that d pre-mirs in all 86 (22+34+30) species belong to this pre-mir class.
Index | ID | Species | Mature miRNA (MatMiR) |
Match/ MatMiR Length |
Chrom | Strand | MatMiR Position |
PreMir Position |
Confidence | Evo_ Source |
Species_ No |
Distribution |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | aga-mir-2-1 | Anopheles gambiae | aga-miR-2 | 23/23 | chr2L | - | 58-80 | N/A | - | miRBase_13_0 | 20/21 | 4/116 |
2 | aga-mir-2-2 | Anopheles gambiae | aga-miR-2 | 23/23 | chr2L | - | 59-81 | N/A | - | miRBase_13_0 | 20/21 | 4/116 |
3 | anoGam1-225 | Anopheles gambiae | sme-miR-2a* | 18/20 | chr3R | + | 10-29 | 38833048-38833125 | 0.928903 | Paralog | 20/21 | 4/116 |
4 | anoGam1-51 | Anopheles gambiae | aga-miR-2 | 23/23 | chr2L | - | 48-70 | 37189469-37189545 | 0.999053 | Paralog | 20/21 | 4/116 |
5 | ame-mir-2-1 | Apis mellifera | ame-miR-2 | 23/23 | Group1.1 | - | 54-76 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
6 | ame-mir-2-2 | Apis mellifera | ame-miR-2 | 23/23 | Group1.1 | - | 50-72 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
7 | ame-mir-2-3 | Apis mellifera | ame-miR-2 | 23/23 | Group1.1 | - | 61-83 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
8 | apiMel2-1 | Apis mellifera | ame-miR-2 | 23/23 | Group1 | - | 49-71 | 100868-100949 | 0.999857 | Paralog | 20/21 | 6/116 |
9 | apiMel2-2 | Apis mellifera | ame-miR-2 | 23/23 | Group1 | - | 49-71 | 101814-101894 | 0.999394 | Paralog | 20/21 | 6/116 |
10 | apiMel2-6 | Apis mellifera | ame-miR-2 | 23/23 | Group1 | - | 49-71 | 102654-102740 | 0.992241 | Paralog | 20/21 | 6/116 |
11 | bmo-mir-2a-1 | Bombyx mori | bmo-miR-2a | 23/23 | nscaf1690 | - | 54-76 | N/A | - | miRBase_13_0 | 20/21 | 3/116 |
12 | bmo-mir-2a-2 | Bombyx mori | bmo-miR-2a | 23/23 | nscaf1690 | - | 52-74 | N/A | - | miRBase_13_0 | 20/21 | 3/116 |
13 | bmo-mir-2b | Bombyx mori | bmo-miR-2b | 23/23 | nscaf1690 | - | 46-68 | N/A | - | miRBase_13_0 | 20/21 | 3/116 |
14 | ce6-69 | Caenorhabditis elegans | sme-miR-2a* | 18/20 | chrV | + | 50-69 | 14354270-14354368 | 0.84222 | Paralog | 20/21 | 2/116 |
15 | cel-mir-2 | Caenorhabditis elegans | cel-miR-2 | 23/23 | chrI | - | 61-83 | N/A | - | miRBase_13_0 | 20/21 | 2/116 |
16 | cap-mir-2a | Capitella sp. | cap-miR-2a | 23/23 | scaffold_933 | + | 61-83 | N/A | - | miRBase_13_0 | 20/21 | 4/116 |
17 | cap-mir-2b | Capitella sp. | cap-miR-2b | 22/22 | scaffold_933 | + | 63-84 | N/A | - | miRBase_13_0 | 20/21 | 4/116 |
18 | cap-mir-2c | Capitella sp. | cap-miR-2c | 22/22 | scaffold_933 | + | 61-82 | N/A | - | miRBase_13_0 | 20/21 | 4/116 |
19 | cap-mir-2d | Capitella sp. | cap-miR-2d | 22/22 | scaffold_876 | - | 60-81 | N/A | - | miRBase_13_0 | 20/21 | 4/116 |
20 | dan-mir-2a-1 | Drosophila ananassae | dan-miR-2a | 23/23 | N/A | N/A | 48-70 | N/A | - | miRBase_13_0 | 20/21 | 9/116 |
21 | dan-mir-2a-2 | Drosophila ananassae | dan-miR-2a | 23/23 | N/A | N/A | 44-66 | N/A | - | miRBase_13_0 | 20/21 | 9/116 |
22 | dan-mir-2b | Drosophila ananassae | dan-miR-2b | 23/23 | N/A | N/A | 54-76 | N/A | - | miRBase_13_0 | 20/21 | 9/116 |
23 | dan-mir-2c | Drosophila ananassae | dan-miR-2c | 23/23 | N/A | N/A | 57-79 | N/A | - | miRBase_13_0 | 20/21 | 9/116 |
24 | droAna3-158 | Drosophila ananassae | sme-miR-2a* | 18/20 | scaffold_7862 | + | 52-71 | N/A | 0.967119 | Paralog | 20/21 | 9/116 |
25 | droAna3-159 | Drosophila ananassae | sme-miR-2a* | 18/20 | scaffold_7862 | + | 52-71 | N/A | 0.967119 | Paralog | 20/21 | 9/116 |
26 | droAna3-160 | Drosophila ananassae | sme-miR-2a* | 18/20 | scaffold_9689 | + | 52-71 | N/A | 0.967119 | Paralog | 20/21 | 9/116 |
27 | droAna3-20 | Drosophila ananassae | dan-miR-2a | 23/23 | scaffold_12916 | + | 49-71 | N/A | 0.998625 | Paralog | 20/21 | 9/116 |
28 | droAna3-21 | Drosophila ananassae | dan-miR-2a | 23/23 | scaffold_12916 | + | 50-72 | N/A | 0.999493 | Paralog | 20/21 | 9/116 |
29 | der-mir-2a-1 | Drosophila erecta | der-miR-2a | 23/23 | N/A | N/A | 49-71 | N/A | - | miRBase_13_0 | 20/21 | 7/116 |
30 | der-mir-2a-2 | Drosophila erecta | der-miR-2a | 23/23 | N/A | N/A | 44-66 | N/A | - | miRBase_13_0 | 20/21 | 7/116 |
31 | der-mir-2b-1 | Drosophila erecta | der-miR-2b | 23/23 | N/A | N/A | 48-70 | N/A | - | miRBase_13_0 | 20/21 | 7/116 |
32 | der-mir-2b-2 | Drosophila erecta | der-miR-2b | 23/23 | N/A | N/A | 54-76 | N/A | - | miRBase_13_0 | 20/21 | 7/116 |
33 | der-mir-2c | Drosophila erecta | der-miR-2c | 23/23 | N/A | N/A | 63-85 | N/A | - | miRBase_13_0 | 20/21 | 7/116 |
34 | droEre2-75 | Drosophila erecta | der-miR-2a | 23/23 | scaffold_4845 | + | 50-72 | 4719806-4719883 | 0.999281 | Paralog | 20/21 | 7/116 |
35 | droEre2-76 | Drosophila erecta | der-miR-2a | 23/23 | scaffold_4845 | + | 50-72 | 4720197-4720280 | 0.999907 | Paralog | 20/21 | 7/116 |
36 | dgr-mir-2a-1 | Drosophila grimshawi | dgr-miR-2a | 23/23 | N/A | N/A | 52-74 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
37 | dgr-mir-2a-2 | Drosophila grimshawi | dgr-miR-2a | 23/23 | N/A | N/A | 44-66 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
38 | dgr-mir-2b | Drosophila grimshawi | dgr-miR-2b | 23/23 | N/A | N/A | 54-76 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
39 | dgr-mir-2c | Drosophila grimshawi | dgr-miR-2c | 23/23 | N/A | N/A | 61-83 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
40 | droGri2-121 | Drosophila grimshawi | dgr-miR-2a | 23/23 | scaffold_15126 | + | 50-72 | N/A | 0.918181 | Paralog | 20/21 | 6/116 |
41 | droGri2-122 | Drosophila grimshawi | dgr-miR-2a | 23/23 | scaffold_15126 | + | 51-73 | N/A | 0.999493 | Paralog | 20/21 | 6/116 |
42 | dme-mir-2a-1 | Drosophila melanogaster | dme-miR-2a | 23/23 | chr2L | - | 49-71 | N/A | - | miRBase_13_0 | 20/21 | 5/116 |
43 | dme-mir-2a-2 | Drosophila melanogaster | dme-miR-2a | 23/23 | chr2L | - | 44-66 | N/A | - | miRBase_13_0 | 20/21 | 5/116 |
44 | dme-mir-2b-1 | Drosophila melanogaster | dme-miR-2b | 23/23 | chr2L | - | 48-70 | N/A | - | miRBase_13_0 | 20/21 | 5/116 |
45 | dme-mir-2b-2 | Drosophila melanogaster | dme-miR-2b | 23/23 | chr2L | - | 54-76 | N/A | - | miRBase_13_0 | 20/21 | 5/116 |
46 | dme-mir-2c | Drosophila melanogaster | dme-miR-2c | 23/23 | chr3R | - | 63-85 | N/A | - | miRBase_13_0 | 20/21 | 5/116 |
47 | dmo-mir-2a-1 | Drosophila mojavensis | dmo-miR-2a | 23/23 | N/A | N/A | 51-73 | N/A | - | miRBase_13_0 | 20/21 | 7/116 |
48 | dmo-mir-2a-2 | Drosophila mojavensis | dmo-miR-2a | 23/23 | N/A | N/A | 44-66 | N/A | - | miRBase_13_0 | 20/21 | 7/116 |
49 | dmo-mir-2b | Drosophila mojavensis | dmo-miR-2b | 23/23 | N/A | N/A | 53-75 | N/A | - | miRBase_13_0 | 20/21 | 7/116 |
50 | dmo-mir-2c | Drosophila mojavensis | dmo-miR-2c | 23/23 | N/A | N/A | 54-76 | N/A | - | miRBase_13_0 | 20/21 | 7/116 |
51 | droMoj3-102 | Drosophila mojavensis | dmo-miR-2b | 23/23 | scaffold_6500 | + | 50-72 | N/A | 0.922844 | Paralog | 20/21 | 7/116 |
52 | droMoj3-103 | Drosophila mojavensis | dmo-miR-2a | 23/23 | scaffold_6500 | + | 50-72 | N/A | 0.982972 | Paralog | 20/21 | 7/116 |
53 | droMoj3-104 | Drosophila mojavensis | dmo-miR-2a | 23/23 | scaffold_6500 | + | 50-72 | N/A | 0.999493 | Paralog | 20/21 | 7/116 |
54 | dpe-mir-2a-1 | Drosophila persimilis | dpe-miR-2a | 23/23 | N/A | N/A | 47-69 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
55 | dpe-mir-2a-2 | Drosophila persimilis | dpe-miR-2a | 23/23 | N/A | N/A | 44-66 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
56 | dpe-mir-2b | Drosophila persimilis | dpe-miR-2b | 23/23 | N/A | N/A | 54-76 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
57 | dpe-mir-2c | Drosophila persimilis | dpe-miR-2c | 23/23 | N/A | N/A | 64-86 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
58 | droPer1-128 | Drosophila persimilis | dpe-miR-2a | 23/23 | super_5 | + | 49-71 | 5559984-5560061 | 0.999557 | Paralog | 20/21 | 6/116 |
59 | droPer1-129 | Drosophila persimilis | dpe-miR-2a | 23/23 | super_5 | + | 50-72 | 5560574-5560657 | 0.999493 | Paralog | 20/21 | 6/116 |
60 | dps-mir-2a-1 | Drosophila pseudoobscura | dps-miR-2a | 23/23 | chr4_group5 | + | 47-69 | N/A | - | miRBase_13_0 | 20/21 | 5/116 |
61 | dps-mir-2a-2 | Drosophila pseudoobscura | dps-miR-2a | 23/23 | chr4_group5 | + | 44-66 | N/A | - | miRBase_13_0 | 20/21 | 5/116 |
62 | dps-mir-2b-1 | Drosophila pseudoobscura | dps-miR-2b | 23/23 | chr4_group3 | + | 48-70 | N/A | - | miRBase_13_0 | 20/21 | 5/116 |
63 | dps-mir-2b-2 | Drosophila pseudoobscura | dps-miR-2b | 23/23 | chr4_group5 | + | 54-76 | N/A | - | miRBase_13_0 | 20/21 | 5/116 |
64 | dps-mir-2c | Drosophila pseudoobscura | dps-miR-2c | 23/23 | chr2 | + | 64-86 | N/A | - | miRBase_13_0 | 20/21 | 5/116 |
65 | droSec1-144 | Drosophila sechellia | dse-miR-2a | 23/23 | super_7 | - | 49-71 | 3183847-3183928 | 0.999875 | Paralog | 20/21 | 9/116 |
66 | droSec1-145 | Drosophila sechellia | dse-miR-2a | 23/23 | super_7 | - | 49-71 | 3184258-3184333 | 0.99963 | Paralog | 20/21 | 9/116 |
67 | droSec1-57 | Drosophila sechellia | dse-miR-2a | 23/23 | super_11507 | - | 50-72 | 1085-1168 | 0.999907 | Paralog | 20/21 | 9/116 |
68 | dse-mir-2a-1 | Drosophila sechellia | dse-miR-2a | 23/23 | N/A | N/A | 49-71 | N/A | - | miRBase_13_0 | 20/21 | 9/116 |
69 | dse-mir-2a-2 | Drosophila sechellia | dse-miR-2a | 23/23 | N/A | N/A | 44-66 | N/A | - | miRBase_13_0 | 20/21 | 9/116 |
70 | dse-mir-2a-3 | Drosophila sechellia | dse-miR-2a | 23/23 | N/A | N/A | 44-66 | N/A | - | miRBase_13_0 | 20/21 | 9/116 |
71 | dse-mir-2b-1 | Drosophila sechellia | dse-miR-2b | 23/23 | N/A | N/A | 48-70 | N/A | - | miRBase_13_0 | 20/21 | 9/116 |
72 | dse-mir-2b-2 | Drosophila sechellia | dse-miR-2b | 23/23 | N/A | N/A | 54-76 | N/A | - | miRBase_13_0 | 20/21 | 9/116 |
73 | dse-mir-2c | Drosophila sechellia | dse-miR-2c | 23/23 | N/A | N/A | 63-85 | N/A | - | miRBase_13_0 | 20/21 | 9/116 |
74 | droSim1-18 | Drosophila simulans | dsi-miR-2b | 23/23 | chr2L | - | 49-71 | 8042713-8042791 | 0.944827 | Paralog | 20/21 | 9/116 |
75 | droSim1-20 | Drosophila simulans | dsi-miR-2a | 23/23 | chr2L | - | 49-71 | 19257536-19257617 | 0.999875 | Paralog | 20/21 | 9/116 |
76 | droSim1-21 | Drosophila simulans | dsi-miR-2a | 23/23 | chr2L | - | 49-71 | 19257961-19258036 | 0.99963 | Paralog | 20/21 | 9/116 |
77 | droSim1-22 | Drosophila simulans | dsi-miR-2b | 23/23 | chr2L | - | 48-70 | 19258247-19258319 | 0.873565 | Paralog | 20/21 | 9/116 |
78 | dsi-mir-2a-1 | Drosophila simulans | dsi-miR-2a | 23/23 | N/A | N/A | 49-71 | N/A | - | miRBase_13_0 | 20/21 | 9/116 |
79 | dsi-mir-2a-2 | Drosophila simulans | dsi-miR-2a | 23/23 | N/A | N/A | 44-66 | N/A | - | miRBase_13_0 | 20/21 | 9/116 |
80 | dsi-mir-2b-1 | Drosophila simulans | dsi-miR-2b | 23/23 | N/A | N/A | 48-70 | N/A | - | miRBase_13_0 | 20/21 | 9/116 |
81 | dsi-mir-2b-2 | Drosophila simulans | dsi-miR-2b | 23/23 | N/A | N/A | 54-76 | N/A | - | miRBase_13_0 | 20/21 | 9/116 |
82 | dsi-mir-2c | Drosophila simulans | dsi-miR-2c | 23/23 | N/A | N/A | 63-85 | N/A | - | miRBase_13_0 | 20/21 | 9/116 |
83 | droVir3-7 | Drosophila virilis | dvi-miR-2a | 23/23 | scaffold_12723 | - | 49-71 | N/A | 0.999365 | Paralog | 20/21 | 6/116 |
84 | droVir3-8 | Drosophila virilis | dvi-miR-2a | 23/23 | scaffold_12723 | - | 49-71 | N/A | 0.964933 | Paralog | 20/21 | 6/116 |
85 | dvi-mir-2a-1 | Drosophila virilis | dvi-miR-2a | 23/23 | N/A | N/A | 50-72 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
86 | dvi-mir-2a-2 | Drosophila virilis | dvi-miR-2a | 23/23 | N/A | N/A | 44-66 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
87 | dvi-mir-2b | Drosophila virilis | dvi-miR-2b | 23/23 | N/A | N/A | 54-76 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
88 | dvi-mir-2c | Drosophila virilis | dvi-miR-2c | 23/23 | N/A | N/A | 61-83 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
89 | droWil1-61 | Drosophila willistoni | dwi-miR-2a | 23/23 | scaffold_180708 | + | 50-72 | N/A | 0.989192 | Paralog | 20/21 | 6/116 |
90 | droWil1-62 | Drosophila willistoni | dwi-miR-2a | 23/23 | scaffold_180708 | + | 50-72 | N/A | 0.999493 | Paralog | 20/21 | 6/116 |
91 | dwi-mir-2a-1 | Drosophila willistoni | dwi-miR-2a | 23/23 | N/A | N/A | 50-72 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
92 | dwi-mir-2a-2 | Drosophila willistoni | dwi-miR-2a | 23/23 | N/A | N/A | 44-66 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
93 | dwi-mir-2b | Drosophila willistoni | dwi-miR-2b | 23/23 | N/A | N/A | 54-76 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
94 | dwi-mir-2c | Drosophila willistoni | dwi-miR-2c | 23/23 | N/A | N/A | 58-80 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
95 | droYak2-11 | Drosophila yakuba | dya-miR-2b | 23/23 | chr2L | - | 49-71 | 10894244-10894322 | 0.944827 | Paralog | 20/21 | 8/116 |
96 | droYak2-51 | Drosophila yakuba | dya-miR-2a | 23/23 | chr2R | - | 49-71 | 6066558-6066639 | 0.999875 | Paralog | 20/21 | 8/116 |
97 | droYak2-52 | Drosophila yakuba | dya-miR-2a | 23/23 | chr2R | - | 49-71 | 6066954-6067029 | 0.99963 | Paralog | 20/21 | 8/116 |
98 | dya-mir-2a-1 | Drosophila yakuba | dya-miR-2a | 23/23 | N/A | N/A | 49-71 | N/A | - | miRBase_13_0 | 20/21 | 8/116 |
99 | dya-mir-2a-2 | Drosophila yakuba | dya-miR-2a | 23/23 | N/A | N/A | 44-66 | N/A | - | miRBase_13_0 | 20/21 | 8/116 |
100 | dya-mir-2b-1 | Drosophila yakuba | dya-miR-2b | 23/23 | N/A | N/A | 48-70 | N/A | - | miRBase_13_0 | 20/21 | 8/116 |
101 | dya-mir-2b-2 | Drosophila yakuba | dya-miR-2b | 23/23 | N/A | N/A | 54-76 | N/A | - | miRBase_13_0 | 20/21 | 8/116 |
102 | dya-mir-2c | Drosophila yakuba | dya-miR-2c | 23/23 | N/A | N/A | 63-85 | N/A | - | miRBase_13_0 | 20/21 | 8/116 |
103 | lgi-mir-2c | Lottia gigantea | lgi-miR-2c | 23/23 | sca_2 | + | 59-81 | N/A | - | miRBase_13_0 | 20/21 | 2/116 |
104 | lgi-mir-2d | Lottia gigantea | lgi-miR-2d | 23/23 | sca_2 | + | 61-83 | N/A | - | miRBase_13_0 | 20/21 | 2/116 |
105 | rn4-286 | Rattus norvegicus | dme-miR-2a | 21/23 | chr6 | - | 16-37 | 42339349-42339434 | 0.942852 | Ortholog | 20/21 | 1/116 |
106 | sme-mir-2a-1 | Schmidtea mediterranea | sme-miR-2a | 24/24 | Contig3375.4 | + | 56-79 | N/A | - | miRBase_13_0 | 20/21 | 5/116 |
107 | sme-mir-2a-2 | Schmidtea mediterranea | sme-miR-2a* | 20/20 | Contig11992.1 | + | 15-34 | N/A | - | miRBase_13_0 | 20/21 | 5/116 |
108 | sme-mir-2a-2 | Schmidtea mediterranea | sme-miR-2a | 24/24 | Contig11992.1 | + | 47-70 | N/A | - | miRBase_13_0 | 20/21 | 5/116 |
109 | sme-mir-2b | Schmidtea mediterranea | sme-miR-2b* | 20/20 | Contig1775.1 | + | 12-31 | N/A | - | miRBase_13_0 | 20/21 | 5/116 |
110 | sme-mir-2b | Schmidtea mediterranea | sme-miR-2b | 22/22 | Contig1775.1 | + | 47-68 | N/A | - | miRBase_13_0 | 20/21 | 5/116 |
111 | sme-mir-2c | Schmidtea mediterranea | sme-miR-2c | 22/22 | Contig2221.1 | - | 54-75 | N/A | - | miRBase_13_0 | 20/21 | 5/116 |
112 | sme-mir-2d | Schmidtea mediterranea | sme-miR-2d | 21/21 | Contig65.1 | - | 72-92 | N/A | - | miRBase_13_0 | 20/21 | 5/116 |
113 | tca-mir-2-1 | Tribolium castaneum | tca-miR-2 | 23/23 | CM000278.1 | + | 52-74 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
114 | tca-mir-2-2 | Tribolium castaneum | tca-miR-2 | 23/23 | CM000278.1 | + | 50-72 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
115 | tca-mir-2-3 | Tribolium castaneum | tca-miR-2 | 23/23 | CM000278.1 | + | 49-71 | N/A | - | miRBase_13_0 | 20/21 | 6/116 |
116 | triCas2-14 | Tribolium castaneum | tca-miR-2 | 23/23 | ChLG3 | + | 50-72 | N/A | 0.999712 | Paralog | 20/21 | 6/116 |
117 | triCas2-17 | Tribolium castaneum | tca-miR-2 | 23/23 | ChLG3 | + | 50-72 | N/A | 0.997706 | Paralog | 20/21 | 6/116 |
118 | triCas2-18 | Tribolium castaneum | tca-miR-2 | 23/23 | ChLG3 | + | 50-72 | N/A | 0.999571 | Paralog | 20/21 | 6/116 |
Total | 118 record(s). |