- Evo_source
- “Evo_source” column indicates that whether this record is a known precursor miRNA (pre-mir) from miRBase 13.0, an orthologous pre-mir highly similar to pre-mirs from other species or a paralogous pre-mir highly similar to pre-mirs from own species.
- Species_No
- In “Species_No” column, the value “a/b” indicates that a out of 86 (22+34+30) species are known to encode this pre-mir class and b out of 86 species are known or predicted to encode this pre-miR class.
- Distribution
- In “Distribution” column, the value “c/d” indicates that c pre-mirs in this own species belong to this pre-mir class and that d pre-mirs in all 86 (22+34+30) species belong to this pre-mir class.
Index | ID | Species | Mature miRNA (MatMiR) |
Match/ MatMiR Length |
Chrom | Strand | MatMiR Position |
PreMir Position |
Confidence | Evo_ Source |
Species_ No |
Distribution |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | bta-mir-200a | Bos taurus | bta-miR-200a | 23/23 | chr16 | - | 52-74 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
2 | bta-mir-200b | Bos taurus | bta-miR-200b | 21/21 | chr16 | - | 38-58 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
3 | bta-mir-200c | Bos taurus | bta-miR-200c | 23/23 | chr5 | - | 41-63 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
4 | bfl-mir-200a | Branchiostoma floridae | bfl-miR-200a | 22/22 | Bf_V2_211 | - | 60-81 | N/A | - | miRBase_13_0 | 21/37 | 6/88 |
5 | bfl-mir-200b | Branchiostoma floridae | bfl-miR-200b | 23/23 | Bf_V2_211 | - | 59-81 | N/A | - | miRBase_13_0 | 21/37 | 6/88 |
6 | bfl-mir-200c | Branchiostoma floridae | bfl-miR-200c | 21/21 | Bf_V2_211 | - | 58-78 | N/A | - | miRBase_13_0 | 21/37 | 6/88 |
7 | cfa-mir-200a | Canis familiaris | cfa-miR-200a | 22/22 | chr5 | + | 16-37 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
8 | cfa-mir-200b | Canis familiaris | cfa-miR-200b | 22/22 | chr5 | + | 9-30 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
9 | cfa-mir-200c | Canis familiaris | cfa-miR-200c | 23/23 | chr27 | - | 41-63 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
10 | cin-mir-200 | Ciona intestinalis | cin-miR-200 | 22/22 | scaffold_71 | + | 50-71 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
11 | csa-mir-200 | Ciona savignyi | csa-miR-200 | 22/22 | reftig_613 | + | 44-65 | N/A | - | miRBase_13_0 | 21/37 | 1/88 |
12 | dre-mir-200a | Danio rerio | dre-miR-200a | 22/22 | chr23 | + | 52-73 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
13 | dre-mir-200b | Danio rerio | dre-miR-200b | 22/22 | chr23 | + | 50-71 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
14 | dre-mir-200c | Danio rerio | dre-miR-200c | 22/22 | chr6 | - | 51-72 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
15 | fru-mir-200a | Fugu rubripes | fru-miR-200a | 22/22 | scaffold_147 | - | 50-71 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
16 | fru-mir-200b | Fugu rubripes | fru-miR-200b | 22/22 | scaffold_147 | - | 50-71 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
17 | gga-mir-200a | Gallus gallus | gga-miR-200a | 22/22 | chr21 | - | 52-73 | N/A | - | miRBase_13_0 | 21/37 | 2/88 |
18 | gga-mir-200b | Gallus gallus | gga-miR-200b | 23/23 | chr21 | - | 46-68 | N/A | - | miRBase_13_0 | 21/37 | 2/88 |
19 | ggo-mir-200c | Gorilla gorilla | ggo-miR-200c | 22/22 | N/A | N/A | 44-65 | N/A | - | miRBase_13_0 | 21/37 | 1/88 |
20 | hsa-mir-200a | Homo sapiens | hsa-miR-200a | 22/22 | chr1 | + | 54-75 | 1093106-1093195 | - | miRBase_13_0 | 21/37 | 3/88 |
21 | hsa-mir-200a | Homo sapiens | hsa-miR-200a* | 22/22 | chr1 | + | 16-37 | 1093106-1093195 | - | miRBase_13_0 | 21/37 | 3/88 |
22 | hsa-mir-200b | Homo sapiens | hsa-miR-200b | 22/22 | chr1 | + | 57-78 | 1092347-1092441 | - | miRBase_13_0 | 21/37 | 3/88 |
23 | hsa-mir-200b | Homo sapiens | hsa-miR-200b* | 22/22 | chr1 | + | 21-42 | 1092347-1092441 | - | miRBase_13_0 | 21/37 | 3/88 |
24 | hsa-mir-200c | Homo sapiens | hsa-miR-200c* | 22/22 | chr12 | + | 5-26 | 6943123-6943190 | - | miRBase_13_0 | 21/37 | 3/88 |
25 | hsa-mir-200c | Homo sapiens | hsa-miR-200c | 23/23 | chr12 | + | 44-66 | 6943123-6943190 | - | miRBase_13_0 | 21/37 | 3/88 |
26 | mml-mir-200a | Macaca mulatta | mml-miR-200a | 22/22 | chr1 | + | 54-75 | N/A | - | miRBase_13_0 | 21/37 | 2/88 |
27 | mml-mir-200c | Macaca mulatta | mml-miR-200c | 22/22 | chr11 | + | 45-66 | N/A | - | miRBase_13_0 | 21/37 | 2/88 |
28 | mdo-mir-200a | Monodelphis domestica | mdo-miR-200a | 22/22 | chr4 | + | 51-72 | N/A | - | miRBase_13_0 | 21/37 | 6/88 |
29 | mdo-mir-200a | Monodelphis domestica | mdo-miR-200a* | 22/22 | chr4 | + | 14-35 | N/A | - | miRBase_13_0 | 21/37 | 6/88 |
30 | mdo-mir-200b | Monodelphis domestica | mdo-miR-200b | 22/22 | chr4 | + | 39-60 | N/A | - | miRBase_13_0 | 21/37 | 6/88 |
31 | mdo-mir-200c | Monodelphis domestica | mdo-miR-200c | 22/22 | chr8 | + | 44-65 | N/A | - | miRBase_13_0 | 21/37 | 6/88 |
32 | mmu-mir-200a | Mus musculus | mmu-miR-200a* | 22/22 | chr4 | - | 16-37 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
33 | mmu-mir-200a | Mus musculus | mmu-miR-200a | 22/22 | chr4 | - | 54-75 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
34 | mmu-mir-200b | Mus musculus | mmu-miR-200b | 22/22 | chr4 | - | 45-66 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
35 | mmu-mir-200b | Mus musculus | mmu-miR-200b* | 22/22 | chr4 | - | 9-30 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
36 | mmu-mir-200c | Mus musculus | mmu-miR-200c* | 22/22 | chr6 | - | 5-26 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
37 | mmu-mir-200c | Mus musculus | mmu-miR-200c | 23/23 | chr6 | - | 45-67 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
38 | oan-mir-200a | Ornithorhynchus anatinus | oan-miR-200a | 23/23 | Contig19080 | - | 66-88 | N/A | - | miRBase_13_0 | 21/37 | 2/88 |
39 | oan-mir-200a | Ornithorhynchus anatinus | oan-miR-200a* | 22/22 | Contig19080 | - | 30-51 | N/A | - | miRBase_13_0 | 21/37 | 2/88 |
40 | oan-mir-200b | Ornithorhynchus anatinus | oan-miR-200b* | 21/21 | Contig19080 | - | 24-44 | N/A | - | miRBase_13_0 | 21/37 | 2/88 |
41 | oan-mir-200b | Ornithorhynchus anatinus | oan-miR-200b | 23/23 | Contig19080 | - | 61-83 | N/A | - | miRBase_13_0 | 21/37 | 2/88 |
42 | ptr-mir-200a | Pan troglodytes | ptr-miR-200a | 22/22 | chr1 | + | 53-74 | N/A | - | miRBase_13_0 | 21/37 | 1/88 |
43 | ppy-mir-200c | Pongo pygmaeus | ppy-miR-200c | 22/22 | N/A | N/A | 45-66 | N/A | - | miRBase_13_0 | 21/37 | 1/88 |
44 | rno-mir-200a | Rattus norvegicus | rno-miR-200a | 22/22 | chr5 | - | 54-75 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
45 | rno-mir-200b | Rattus norvegicus | rno-miR-200b | 23/23 | chr5 | - | 57-79 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
46 | rno-mir-200c | Rattus norvegicus | rno-miR-200c | 22/22 | chr4 | - | 45-66 | N/A | - | miRBase_13_0 | 21/37 | 3/88 |
47 | sko-mir-200 | Saccoglossus kowalevskii | sko-miR-200 | 23/23 | N/A | N/A | 61-83 | N/A | - | miRBase_13_0 | 21/37 | 1/88 |
48 | spu-mir-200 | Strongylocentrotus purpuratus | spu-miR-200 | 23/23 | N/A | N/A | 47-69 | N/A | - | miRBase_13_0 | 21/37 | 2/88 |
49 | tni-mir-200a | Tetraodon nigroviridis | tni-miR-200a | 22/22 | chrUn_random | + | 40-61 | N/A | - | miRBase_13_0 | 21/37 | 2/88 |
50 | tni-mir-200b | Tetraodon nigroviridis | tni-miR-200b | 22/22 | chrUn_random | + | 39-60 | N/A | - | miRBase_13_0 | 21/37 | 2/88 |
51 | xtr-mir-200a | Xenopus tropicalis | xtr-miR-200a | 22/22 | scaffold_985 | + | 53-74 | N/A | - | miRBase_13_0 | 21/37 | 2/88 |
52 | xtr-mir-200b | Xenopus tropicalis | xtr-miR-200b | 23/23 | scaffold_985 | + | 53-75 | N/A | - | miRBase_13_0 | 21/37 | 2/88 |
Total | 52 record(s). |