- Evo_source
- “Evo_source” column indicates that whether this record is a known precursor miRNA (pre-mir) from miRBase 13.0, an orthologous pre-mir highly similar to pre-mirs from other species or a paralogous pre-mir highly similar to pre-mirs from own species.
- Species_No
- In “Species_No” column, the value “a/b” indicates that a out of 86 (22+34+30) species are known to encode this pre-mir class and b out of 86 species are known or predicted to encode this pre-miR class.
- Distribution
- In “Distribution” column, the value “c/d” indicates that c pre-mirs in this own species belong to this pre-mir class and that d pre-mirs in all 86 (22+34+30) species belong to this pre-mir class.
Index | ID | Species | Mature miRNA (MatMiR) |
Match/ MatMiR Length |
Chrom | Strand | MatMiR Position |
PreMir Position |
Confidence | Evo_ Source |
Species_ No |
Distribution |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | anoCar1-150 | Anolis carolinensis | rno-miR-204* | 22/22 | scaffold_230 | - | 48-69 | 191464-191538 | 0.92644 | Ortholog | 20/29 | 1/38 |
2 | bta-mir-204 | Bos taurus | bta-miR-204 | 22/22 | chr8 | - | 23-44 | N/A | - | miRBase_13_0 | 20/29 | 1/38 |
3 | cfa-mir-204 | Canis familiaris | cfa-miR-204 | 22/22 | chr1 | + | 1-22 | N/A | - | miRBase_13_0 | 20/29 | 1/38 |
4 | cavPor3-348 | Cavia porcellus | rno-miR-204* | 22/22 | scaffold_21 | - | 48-69 | 21988239-21988313 | 0.935338 | Ortholog | 20/29 | 1/38 |
5 | dre-mir-204-1 | Danio rerio | dre-miR-204 | 22/22 | chr5 | - | 18-39 | N/A | - | miRBase_13_0 | 20/29 | 3/38 |
6 | dre-mir-204-2 | Danio rerio | dre-miR-204 | 22/22 | chr7 | + | 37-58 | N/A | - | miRBase_13_0 | 20/29 | 3/38 |
7 | dre-mir-204-3 | Danio rerio | dre-miR-204 | 22/22 | N/A | N/A | 37-58 | N/A | - | miRBase_13_0 | 20/29 | 3/38 |
8 | droVir3-199 | Drosophila virilis | oan-miR-204* | 18/20 | scaffold_13049 | + | 51-70 | N/A | 0.96612 | Ortholog | 20/29 | 1/38 |
9 | echTel1-85 | Echinops telfari | rno-miR-204* | 22/22 | scaffold_230818 | + | 51-72 | N/A | 0.970438 | Ortholog | 20/29 | 1/38 |
10 | eriEur1-50 | Erinaceus europaeus | rno-miR-204* | 22/22 | scaffold_233154 | + | 51-72 | N/A | 0.956586 | Ortholog | 20/29 | 1/38 |
11 | fru-mir-204 | Fugu rubripes | fru-miR-204 | 22/22 | scaffold_2 | + | 15-36 | N/A | - | miRBase_13_0 | 20/29 | 1/38 |
12 | gga-mir-204-1 | Gallus gallus | gga-miR-204 | 22/22 | N/A | N/A | 33-54 | N/A | - | miRBase_13_0 | 20/29 | 2/38 |
13 | gga-mir-204-2 | Gallus gallus | gga-miR-204 | 22/22 | chr10 | + | 27-48 | N/A | - | miRBase_13_0 | 20/29 | 2/38 |
14 | ggo-mir-204 | Gorilla gorilla | ggo-miR-204 | 22/22 | N/A | N/A | 33-54 | N/A | - | miRBase_13_0 | 20/29 | 1/38 |
15 | hsa-mir-204 | Homo sapiens | hsa-miR-204 | 22/22 | chr9 | - | 33-54 | 72614711-72614820 | - | miRBase_13_0 | 20/29 | 1/38 |
16 | mml-mir-204 | Macaca mulatta | mml-miR-204 | 22/22 | chr15 | - | 33-54 | N/A | - | miRBase_13_0 | 20/29 | 1/38 |
17 | mne-mir-204 | Macaca nemestrina | mne-miR-204 | 22/22 | N/A | N/A | 33-54 | N/A | - | miRBase_13_0 | 20/29 | 1/38 |
18 | mdo-mir-204 | Monodelphis domestica | mdo-miR-204 | 22/22 | chr1 | - | 25-46 | N/A | - | miRBase_13_0 | 20/29 | 2/38 |
19 | monDom4-367 | Monodelphis domestica | rno-miR-204* | 22/22 | chr6 | + | 51-72 | 95848838-95848917 | 0.939757 | Paralog | 20/29 | 2/38 |
20 | mmu-mir-204 | Mus musculus | mmu-miR-204 | 22/22 | chr19 | + | 6-27 | N/A | - | miRBase_13_0 | 20/29 | 1/38 |
21 | oan-mir-204 | Ornithorhynchus anatinus | oan-miR-204 | 22/22 | Contig54054 | + | 31-52 | N/A | - | miRBase_13_0 | 20/29 | 2/38 |
22 | oan-mir-204 | Ornithorhynchus anatinus | oan-miR-204* | 20/20 | Contig54054 | + | 69-88 | N/A | - | miRBase_13_0 | 20/29 | 2/38 |
23 | ornAna1-50 | Ornithorhynchus anatinus | rno-miR-204* | 22/22 | chrX5 | + | 51-72 | 387892-387971 | 0.938174 | Paralog | 20/29 | 2/38 |
24 | oryCun1-439 | Oryctolagus cuniculus | tni-miR-204b | 21/22 | scaffold_209315 | - | 16-37 | N/A | 0.996842 | Ortholog | 20/29 | 1/38 |
25 | oryLat2-336 | Oryzias latipes | oan-miR-204* | 19/20 | chr6 | - | 51-69 | 11908299-11908379 | 0.892124 | Ortholog | 20/29 | 2/38 |
26 | oryLat2-418 | Oryzias latipes | tni-miR-204b | 21/22 | chr9 | - | 14-35 | 16361102-16361186 | 0.989486 | Ortholog | 20/29 | 2/38 |
27 | otoGar1-246 | Otolemur garnettii | rno-miR-204* | 22/22 | scaffold_119878.1-643825 | + | 51-72 | N/A | 0.956586 | Ortholog | 20/29 | 1/38 |
28 | ppa-mir-204 | Pan paniscus | ppa-miR-204 | 22/22 | N/A | N/A | 33-54 | N/A | - | miRBase_13_0 | 20/29 | 1/38 |
29 | ptr-mir-204 | Pan troglodytes | ptr-miR-204 | 22/22 | chr9 | - | 33-54 | N/A | - | miRBase_13_0 | 20/29 | 1/38 |
30 | ppy-mir-204 | Pongo pygmaeus | ppy-miR-204 | 22/22 | N/A | N/A | 33-54 | N/A | - | miRBase_13_0 | 20/29 | 1/38 |
31 | rno-mir-204 | Rattus norvegicus | rno-miR-204* | 22/22 | chr1 | + | 72-93 | N/A | - | miRBase_13_0 | 20/29 | 1/38 |
32 | rno-mir-204 | Rattus norvegicus | rno-miR-204 | 22/22 | chr1 | + | 33-54 | N/A | - | miRBase_13_0 | 20/29 | 1/38 |
33 | sla-mir-204 | Saguinus labiatus | sla-miR-204 | 22/22 | N/A | N/A | 33-54 | N/A | - | miRBase_13_0 | 20/29 | 1/38 |
34 | ssc-mir-204 | Sus scrofa | ssc-miR-204 | 22/22 | chr1 | - | 32-53 | N/A | - | miRBase_13_0 | 20/29 | 1/38 |
35 | taeGut1-291 | Taeniopygia guttata | oan-miR-204* | 18/20 | chr5_random | + | 10-27 | 1203890-1203966 | 0.912743 | Ortholog | 20/29 | 2/38 |
36 | taeGut1-372 | Taeniopygia guttata | rno-miR-204* | 21/22 | chrZ | + | 51-72 | 16883811-16883890 | 0.918795 | Ortholog | 20/29 | 2/38 |
37 | tni-mir-204a | Tetraodon nigroviridis | tni-miR-204a | 22/22 | chr13 | + | 15-36 | N/A | - | miRBase_13_0 | 20/29 | 2/38 |
38 | tni-mir-204b | Tetraodon nigroviridis | tni-miR-204b | 22/22 | chr12 | + | 16-37 | N/A | - | miRBase_13_0 | 20/29 | 2/38 |
39 | xtr-mir-204-1 | Xenopus tropicalis | xtr-miR-204 | 22/22 | scaffold_118 | - | 31-52 | N/A | - | miRBase_13_0 | 20/29 | 2/38 |
40 | xtr-mir-204-2 | Xenopus tropicalis | xtr-miR-204 | 22/22 | scaffold_158 | + | 16-37 | N/A | - | miRBase_13_0 | 20/29 | 2/38 |
Total | 40 record(s). |