- Evo_source
- “Evo_source” column indicates that whether this record is a known precursor miRNA (pre-mir) from miRBase 13.0, an orthologous pre-mir highly similar to pre-mirs from other species or a paralogous pre-mir highly similar to pre-mirs from own species.
- Species_No
- In “Species_No” column, the value “a/b” indicates that a out of 86 (22+34+30) species are known to encode this pre-mir class and b out of 86 species are known or predicted to encode this pre-miR class.
- Distribution
- In “Distribution” column, the value “c/d” indicates that c pre-mirs in this own species belong to this pre-mir class and that d pre-mirs in all 86 (22+34+30) species belong to this pre-mir class.
Index | ID | Species | Mature miRNA (MatMiR) |
Match/ MatMiR Length |
Chrom | Strand | MatMiR Position |
PreMir Position |
Confidence | Evo_ Source |
Species_ No |
Distribution |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | bta-mir-216a | Bos taurus | bta-miR-216a | 22/22 | chr11 | - | 19-40 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
2 | bta-mir-216b | Bos taurus | bta-miR-216b | 22/22 | chr11 | - | 11-32 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
3 | bfl-mir-216 | Branchiostoma floridae | bfl-miR-216 | 23/23 | Bf_V2_29 | - | 9-31 | N/A | - | miRBase_13_0 | 24/39 | 1/67 |
4 | calJac1-584 | Callithrix jacchus | hsa-miR-216a | 22/22 | Contig668 | - | 14-35 | 191266-191350 | 0.994234 | Ortholog | 24/39 | 2/67 |
5 | calJac1-584 | Callithrix jacchus | ptr-miR-216a | 19/21 | Contig668 | - | 16-34 | 191266-191350 | 0.974798 | Ortholog | 24/39 | 2/67 |
6 | calJac1-584 | Callithrix jacchus | fru-miR-216a | 21/22 | Contig668 | - | 15-35 | 191266-191350 | 0.988591 | Ortholog | 24/39 | 2/67 |
7 | calJac1-584 | Callithrix jacchus | bfl-miR-216 | 23/23 | Contig668 | - | 14-36 | 191266-191350 | 0.990832 | Ortholog | 24/39 | 2/67 |
8 | calJac1-585 | Callithrix jacchus | mmu-miR-216b | 22/22 | Contig668 | - | 13-34 | 201756-201839 | 0.998504 | Ortholog | 24/39 | 2/67 |
9 | cfa-mir-216a | Canis familiaris | cfa-miR-216a | 21/21 | chr10 | - | 19-39 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
10 | cfa-mir-216b | Canis familiaris | cfa-miR-216b | 22/22 | chr10 | - | 1-22 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
11 | cap-mir-216a | Capitella sp. | cap-miR-216a | 22/22 | scaffold_192 | - | 9-30 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
12 | cap-mir-216b | Capitella sp. | cap-miR-216b | 22/22 | scaffold_192 | - | 8-29 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
13 | cavPor3-603 | Cavia porcellus | mmu-miR-216b | 22/22 | scaffold_48 | + | 14-35 | 8638107-8638189 | 0.948818 | Ortholog | 24/39 | 1/67 |
14 | cin-mir-216 | Ciona intestinalis | cin-miR-216 | 23/23 | N/A | N/A | 16-38 | N/A | - | miRBase_13_0 | 24/39 | 1/67 |
15 | csa-mir-216a | Ciona savignyi | csa-miR-216a | 23/23 | reftig_16 | + | 16-38 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
16 | csa-mir-216b | Ciona savignyi | csa-miR-216b | 22/22 | reftig_16 | + | 16-37 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
17 | dre-mir-216a-1 | Danio rerio | dre-miR-216a | 22/22 | chr22 | - | 15-36 | N/A | - | miRBase_13_0 | 24/39 | 4/67 |
18 | dre-mir-216a-2 | Danio rerio | dre-miR-216a | 22/22 | chr22 | - | 15-36 | N/A | - | miRBase_13_0 | 24/39 | 4/67 |
19 | dre-mir-216b-1 | Danio rerio | dre-miR-216b | 22/22 | chr22 | - | 11-32 | N/A | - | miRBase_13_0 | 24/39 | 4/67 |
20 | dre-mir-216b-2 | Danio rerio | dre-miR-216b | 22/22 | chr22 | - | 10-31 | N/A | - | miRBase_13_0 | 24/39 | 4/67 |
21 | dasNov1-195 | Dasypus novemcinctus | mmu-miR-216b | 22/22 | scaffold_33050 | - | 13-34 | N/A | 0.966777 | Ortholog | 24/39 | 1/67 |
22 | echTel1-12 | Echinops telfari | mmu-miR-216b | 22/22 | scaffold_132854 | - | 12-33 | N/A | 0.999169 | Ortholog | 24/39 | 2/67 |
23 | echTel1-36 | Echinops telfari | hsa-miR-216a | 22/22 | scaffold_189404 | + | 51-72 | N/A | 0.971134 | Ortholog | 24/39 | 2/67 |
24 | echTel1-36 | Echinops telfari | gga-miR-216 | 21/21 | scaffold_189404 | + | 51-71 | N/A | 0.955368 | Ortholog | 24/39 | 2/67 |
25 | echTel1-36 | Echinops telfari | fru-miR-216a | 21/22 | scaffold_189404 | + | 15-35 | N/A | 0.995785 | Ortholog | 24/39 | 2/67 |
26 | echTel1-36 | Echinops telfari | bfl-miR-216 | 23/23 | scaffold_189404 | + | 14-36 | N/A | 0.996771 | Ortholog | 24/39 | 2/67 |
27 | echTel1-36 | Echinops telfari | ptr-miR-216a | 19/21 | scaffold_189404 | + | 16-34 | N/A | 0.991222 | Ortholog | 24/39 | 2/67 |
28 | equCab1-136 | Equus caballus | mmu-miR-216b | 22/22 | chr15 | + | 10-31 | 40971496-40971573 | 0.983594 | Ortholog | 24/39 | 1/67 |
29 | eriEur1-100 | Erinaceus europaeus | bfl-miR-216 | 21/23 | scaffold_304608 | + | 13-33 | N/A | 0.949436 | Ortholog | 24/39 | 2/67 |
30 | eriEur1-100 | Erinaceus europaeus | ptr-miR-216a | 19/21 | scaffold_304608 | + | 15-33 | N/A | 0.844929 | Ortholog | 24/39 | 2/67 |
31 | eriEur1-100 | Erinaceus europaeus | fru-miR-216a | 20/22 | scaffold_304608 | + | 14-33 | N/A | 0.906153 | Ortholog | 24/39 | 2/67 |
32 | eriEur1-232 | Erinaceus europaeus | mmu-miR-216b | 22/22 | scaffold_360102 | - | 13-34 | N/A | 0.973234 | Ortholog | 24/39 | 2/67 |
33 | felCat3-175 | Felis catus | bfl-miR-216 | 23/23 | scaffold_157492 | - | 14-36 | 230012-230096 | 0.962721 | Ortholog | 24/39 | 2/67 |
34 | felCat3-175 | Felis catus | gga-miR-216 | 21/21 | scaffold_157492 | - | 13-33 | 230013-230095 | 0.981598 | Ortholog | 24/39 | 2/67 |
35 | felCat3-175 | Felis catus | fru-miR-216a | 21/22 | scaffold_157492 | - | 15-35 | 230012-230096 | 0.950498 | Ortholog | 24/39 | 2/67 |
36 | felCat3-175 | Felis catus | ptr-miR-216a | 19/21 | scaffold_157492 | - | 16-34 | 230012-230096 | 0.918331 | Ortholog | 24/39 | 2/67 |
37 | felCat3-175 | Felis catus | hsa-miR-216a | 22/22 | scaffold_157492 | - | 14-35 | 230012-230096 | 0.974189 | Ortholog | 24/39 | 2/67 |
38 | felCat3-177 | Felis catus | mmu-miR-216b | 22/22 | scaffold_157492 | - | 13-34 | 263992-264075 | 0.990641 | Ortholog | 24/39 | 2/67 |
39 | fru-mir-216a | Fugu rubripes | fru-miR-216a | 22/22 | scaffold_86 | - | 7-28 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
40 | fru-mir-216b | Fugu rubripes | fru-miR-216b | 22/22 | scaffold_86 | - | 9-30 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
41 | galGal3-4 | Gallus gallus | ptr-miR-216a | 19/21 | chr1 | + | 22-41 | 157545727-157545815 | 0.950408 | Paralog | 24/39 | 3/67 |
42 | gga-mir-216 | Gallus gallus | gga-miR-216 | 21/21 | chr3 | - | 19-39 | N/A | - | miRBase_13_0 | 24/39 | 3/67 |
43 | gga-mir-216b | Gallus gallus | gga-miR-216b | 22/22 | chr3 | - | 16-37 | N/A | - | miRBase_13_0 | 24/39 | 3/67 |
44 | gasAcu1-230 | Gasterosteus aculeatus | gga-miR-216 | 21/21 | chrIX | - | 15-35 | 18425228-18425309 | 0.954506 | Ortholog | 24/39 | 2/67 |
45 | gasAcu1-230 | Gasterosteus aculeatus | ptr-miR-216a | 19/21 | chrIX | - | 17-35 | 18425228-18425309 | 0.880257 | Ortholog | 24/39 | 2/67 |
46 | gasAcu1-230 | Gasterosteus aculeatus | bfl-miR-216 | 23/23 | chrIX | - | 15-37 | 18425228-18425309 | 0.948298 | Ortholog | 24/39 | 2/67 |
47 | gasAcu1-230 | Gasterosteus aculeatus | hsa-miR-216a | 22/22 | chrIX | - | 15-36 | 18425228-18425309 | 0.965016 | Ortholog | 24/39 | 2/67 |
48 | gasAcu1-230 | Gasterosteus aculeatus | fru-miR-216a | 21/22 | chrIX | - | 16-36 | 18425228-18425309 | 0.940628 | Ortholog | 24/39 | 2/67 |
49 | gasAcu1-304 | Gasterosteus aculeatus | gga-miR-216 | 20/21 | chrVI | + | 11-30 | 9441888-9441965 | 0.891405 | Ortholog | 24/39 | 2/67 |
50 | gasAcu1-304 | Gasterosteus aculeatus | bfl-miR-216 | 22/23 | chrVI | + | 13-34 | 9441886-9441967 | 0.848665 | Ortholog | 24/39 | 2/67 |
51 | gasAcu1-304 | Gasterosteus aculeatus | hsa-miR-216a | 21/22 | chrVI | + | 13-33 | 9441886-9441967 | 0.896268 | Ortholog | 24/39 | 2/67 |
52 | gasAcu1-304 | Gasterosteus aculeatus | ptr-miR-216a | 19/21 | chrVI | + | 14-32 | 9441886-9441967 | 0.821346 | Ortholog | 24/39 | 2/67 |
53 | gasAcu1-304 | Gasterosteus aculeatus | fru-miR-216a | 22/22 | chrVI | + | 10-31 | 9441888-9441965 | 0.920689 | Ortholog | 24/39 | 2/67 |
54 | ggo-mir-216 | Gorilla gorilla | ggo-miR-216 | 21/21 | N/A | N/A | 19-39 | N/A | - | miRBase_13_0 | 24/39 | 1/67 |
55 | hsa-mir-216a | Homo sapiens | hsa-miR-216a | 22/22 | chr2 | - | 19-40 | 56069589-56069698 | - | miRBase_13_0 | 24/39 | 2/67 |
56 | hsa-mir-216b | Homo sapiens | hsa-miR-216b | 22/22 | chr2 | - | 11-32 | 56081353-56081434 | - | miRBase_13_0 | 24/39 | 2/67 |
57 | lca-mir-216 | Lemur catta | lca-miR-216 | 21/21 | N/A | N/A | 19-39 | N/A | - | miRBase_13_0 | 24/39 | 1/67 |
58 | lgi-mir-216a | Lottia gigantea | lgi-miR-216a | 23/23 | sca_22 | + | 15-37 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
59 | lgi-mir-216b | Lottia gigantea | lgi-miR-216b | 23/23 | sca_22 | + | 5-27 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
60 | loxAfr1-126 | Loxodonta africana | ptr-miR-216a | 19/21 | scaffold_216070 | + | 16-34 | N/A | 0.985988 | Ortholog | 24/39 | 2/67 |
61 | loxAfr1-126 | Loxodonta africana | fru-miR-216a | 21/22 | scaffold_216070 | + | 15-35 | N/A | 0.994386 | Ortholog | 24/39 | 2/67 |
62 | loxAfr1-126 | Loxodonta africana | bfl-miR-216 | 23/23 | scaffold_216070 | + | 14-36 | N/A | 0.995433 | Ortholog | 24/39 | 2/67 |
63 | loxAfr1-28 | Loxodonta africana | mmu-miR-216b | 22/22 | scaffold_11445 | + | 10-31 | N/A | 0.995958 | Ortholog | 24/39 | 2/67 |
64 | mml-mir-216a | Macaca mulatta | mml-miR-216a | 22/22 | chr13 | - | 19-40 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
65 | mml-mir-216b | Macaca mulatta | mml-miR-216b | 22/22 | chr13 | - | 11-32 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
66 | mdo-mir-216 | Monodelphis domestica | mdo-miR-216 | 21/21 | chr1 | + | 19-39 | N/A | - | miRBase_13_0 | 24/39 | 1/67 |
67 | mmu-mir-216a | Mus musculus | mmu-miR-216a | 22/22 | chr11 | + | 7-28 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
68 | mmu-mir-216b | Mus musculus | mmu-miR-216b | 22/22 | chr11 | + | 14-35 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
69 | oan-mir-216 | Ornithorhynchus anatinus | oan-miR-216* | 20/20 | Ultra56 | - | 70-89 | N/A | - | miRBase_13_0 | 24/39 | 1/67 |
70 | oan-mir-216 | Ornithorhynchus anatinus | oan-miR-216 | 22/22 | Ultra56 | - | 30-51 | N/A | - | miRBase_13_0 | 24/39 | 1/67 |
71 | oryLat2-146 | Oryzias latipes | ptr-miR-216a | 19/21 | chr15 | - | 15-33 | 21350803-21350886 | 0.894292 | Ortholog | 24/39 | 3/67 |
72 | oryLat2-146 | Oryzias latipes | fru-miR-216a | 22/22 | chr15 | - | 13-34 | 21350803-21350886 | 0.966774 | Ortholog | 24/39 | 3/67 |
73 | oryLat2-146 | Oryzias latipes | gga-miR-216 | 20/21 | chr15 | - | 14-33 | 21350803-21350886 | 0.936867 | Ortholog | 24/39 | 3/67 |
74 | oryLat2-146 | Oryzias latipes | hsa-miR-216a | 21/22 | chr15 | - | 14-34 | 21350803-21350886 | 0.955941 | Ortholog | 24/39 | 3/67 |
75 | oryLat2-146 | Oryzias latipes | bfl-miR-216 | 22/23 | chr15 | - | 15-36 | 21350802-21350887 | 0.945285 | Ortholog | 24/39 | 3/67 |
76 | oryLat2-148 | Oryzias latipes | gga-miR-216 | 19/21 | chr15 | - | 26-46 | 21351458-21351552 | 0.82254 | Ortholog | 24/39 | 3/67 |
77 | oryLat2-148 | Oryzias latipes | dre-miR-216b | 22/22 | chr15 | - | 26-47 | 21351458-21351552 | 0.801153 | Ortholog | 24/39 | 3/67 |
78 | oryLat2-3 | Oryzias latipes | gga-miR-216 | 20/21 | chr1 | + | 17-36 | 2673399-2673483 | 0.997847 | Ortholog | 24/39 | 3/67 |
79 | oryLat2-3 | Oryzias latipes | hsa-miR-216a | 21/22 | chr1 | + | 19-39 | 2673397-2673484 | 0.998764 | Ortholog | 24/39 | 3/67 |
80 | oryLat2-3 | Oryzias latipes | ptr-miR-216a | 19/21 | chr1 | + | 20-38 | 2673397-2673484 | 0.995521 | Ortholog | 24/39 | 3/67 |
81 | oryLat2-3 | Oryzias latipes | fru-miR-216a | 22/22 | chr1 | + | 16-37 | 2673399-2673483 | 0.999167 | Ortholog | 24/39 | 3/67 |
82 | oryLat2-3 | Oryzias latipes | bfl-miR-216 | 22/23 | chr1 | + | 19-40 | 2673397-2673484 | 0.997618 | Ortholog | 24/39 | 3/67 |
83 | otoGar1-412 | Otolemur garnettii | ptr-miR-216a | 19/21 | scaffold_87303.1-13046 | - | 16-34 | N/A | 0.990803 | Ortholog | 24/39 | 3/67 |
84 | otoGar1-412 | Otolemur garnettii | fru-miR-216a | 21/22 | scaffold_87303.1-13046 | - | 15-35 | N/A | 0.996166 | Ortholog | 24/39 | 3/67 |
85 | otoGar1-412 | Otolemur garnettii | hsa-miR-216a | 22/22 | scaffold_87303.1-13046 | - | 14-35 | N/A | 0.996486 | Ortholog | 24/39 | 3/67 |
86 | otoGar1-412 | Otolemur garnettii | bfl-miR-216 | 23/23 | scaffold_87303.1-13046 | - | 14-36 | N/A | 0.994244 | Ortholog | 24/39 | 3/67 |
87 | otoGar1-413 | Otolemur garnettii | mmu-miR-216b | 22/22 | scaffold_87303.1-13046 | - | 13-34 | N/A | 0.98686 | Ortholog | 24/39 | 3/67 |
88 | otoGar1-414 | Otolemur garnettii | mmu-miR-216b | 22/22 | scaffold_87848.1-248731 | - | 13-34 | N/A | 0.98686 | Ortholog | 24/39 | 3/67 |
89 | ppa-mir-216 | Pan paniscus | ppa-miR-216 | 21/21 | N/A | N/A | 19-39 | N/A | - | miRBase_13_0 | 24/39 | 1/67 |
90 | ptr-mir-216a | Pan troglodytes | ptr-miR-216a | 21/21 | chr2a | - | 18-38 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
91 | ptr-mir-216b | Pan troglodytes | ptr-miR-216b | 22/22 | chr2a | - | 11-32 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
92 | ponAbe2-533 | Pongo abelii | mmu-miR-216b | 22/22 | chr2a | + | 10-31 | 55007326-55007403 | 0.983594 | Ortholog | 24/39 | 1/67 |
93 | ppy-mir-216 | Pongo pygmaeus | ppy-miR-216 | 21/21 | N/A | N/A | 19-39 | N/A | - | miRBase_13_0 | 24/39 | 1/67 |
94 | rn4-105 | Rattus norvegicus | mmu-miR-216b | 22/22 | chr14 | + | 10-31 | 109655053-109655130 | 0.998472 | Paralog | 24/39 | 2/67 |
95 | rno-mir-216a | Rattus norvegicus | rno-miR-216a | 22/22 | chr14 | + | 19-40 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
96 | sorAra1-77 | Sorex araneus | mmu-miR-216b | 22/22 | scaffold_229366 | + | 11-32 | N/A | 0.96675 | Ortholog | 24/39 | 1/67 |
97 | ssc-mir-216 | Sus scrofa | ssc-miR-216 | 21/21 | chr3 | + | 19-39 | N/A | - | miRBase_13_0 | 24/39 | 1/67 |
98 | taeGut1-232 | Taeniopygia guttata | hsa-miR-216a | 22/22 | chr3 | + | 13-34 | 28149610-28149691 | 0.999719 | Ortholog | 24/39 | 1/67 |
99 | taeGut1-232 | Taeniopygia guttata | bfl-miR-216 | 23/23 | chr3 | + | 14-36 | 28149609-28149692 | 0.999524 | Ortholog | 24/39 | 1/67 |
100 | taeGut1-232 | Taeniopygia guttata | ptr-miR-216a | 19/21 | chr3 | + | 16-34 | 28149609-28149692 | 0.999048 | Ortholog | 24/39 | 1/67 |
101 | taeGut1-232 | Taeniopygia guttata | gga-miR-216 | 21/21 | chr3 | + | 13-33 | 28149610-28149691 | 0.999561 | Ortholog | 24/39 | 1/67 |
102 | taeGut1-232 | Taeniopygia guttata | fru-miR-216a | 21/22 | chr3 | + | 15-35 | 28149609-28149692 | 0.999744 | Ortholog | 24/39 | 1/67 |
103 | tni-mir-216a | Tetraodon nigroviridis | tni-miR-216a | 22/22 | chr17 | + | 7-28 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
104 | tni-mir-216b | Tetraodon nigroviridis | tni-miR-216b | 22/22 | chr17 | + | 9-30 | N/A | - | miRBase_13_0 | 24/39 | 2/67 |
105 | tupBel1-122 | Tupaia belangeri | ptr-miR-216a | 19/21 | scaffold_116967.1-228156 | - | 16-34 | N/A | 0.978647 | Ortholog | 24/39 | 2/67 |
106 | tupBel1-122 | Tupaia belangeri | bfl-miR-216 | 23/23 | scaffold_116967.1-228156 | - | 14-36 | N/A | 0.992197 | Ortholog | 24/39 | 2/67 |
107 | tupBel1-122 | Tupaia belangeri | hsa-miR-216a | 22/22 | scaffold_116967.1-228156 | - | 14-35 | N/A | 0.9951 | Ortholog | 24/39 | 2/67 |
108 | tupBel1-122 | Tupaia belangeri | fru-miR-216a | 21/22 | scaffold_116967.1-228156 | - | 15-35 | N/A | 0.990296 | Ortholog | 24/39 | 2/67 |
109 | tupBel1-123 | Tupaia belangeri | mmu-miR-216b | 22/22 | scaffold_116967.1-228156 | - | 13-34 | N/A | 0.999599 | Ortholog | 24/39 | 2/67 |
110 | xtr-mir-216 | Xenopus tropicalis | xtr-miR-216 | 21/21 | scaffold_242 | + | 17-37 | N/A | - | miRBase_13_0 | 24/39 | 1/67 |
Total | 110 record(s). |