- Evo_source
- “Evo_source” column indicates that whether this record is a known precursor miRNA (pre-mir) from miRBase 13.0, an orthologous pre-mir highly similar to pre-mirs from other species or a paralogous pre-mir highly similar to pre-mirs from own species.
- Species_No
- In “Species_No” column, the value “a/b” indicates that a out of 86 (22+34+30) species are known to encode this pre-mir class and b out of 86 species are known or predicted to encode this pre-miR class.
- Distribution
- In “Distribution” column, the value “c/d” indicates that c pre-mirs in this own species belong to this pre-mir class and that d pre-mirs in all 86 (22+34+30) species belong to this pre-mir class.
Index | ID | Species | Mature miRNA (MatMiR) |
Match/ MatMiR Length |
Chrom | Strand | MatMiR Position |
PreMir Position |
Confidence | Evo_ Source |
Species_ No |
Distribution |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | ame-mir-29b | Apis mellifera | ame-miR-29b | 20/20 | Group8.25 | - | 67-86 | N/A | - | miRBase_13_0 | 28/46 | 2/165 |
2 | age-mir-29a | Ateles geoffroyi | age-miR-29a | 22/22 | N/A | N/A | 41-62 | N/A | - | miRBase_13_0 | 28/46 | 2/165 |
3 | age-mir-29b | Ateles geoffroyi | age-miR-29b | 20/20 | N/A | N/A | 51-70 | N/A | - | miRBase_13_0 | 28/46 | 2/165 |
4 | bta-mir-29a | Bos taurus | bta-miR-29a | 23/23 | chr4 | - | 41-63 | N/A | - | miRBase_13_0 | 28/46 | 6/165 |
5 | bta-mir-29b-1 | Bos taurus | bta-miR-29b | 23/23 | chr4 | - | 51-73 | N/A | - | miRBase_13_0 | 28/46 | 6/165 |
6 | bta-mir-29b-2 | Bos taurus | bta-miR-29b | 23/23 | chr16 | + | 52-74 | N/A | - | miRBase_13_0 | 28/46 | 6/165 |
7 | bta-mir-29c | Bos taurus | bta-miR-29c | 22/22 | chr16 | + | 54-75 | N/A | - | miRBase_13_0 | 28/46 | 6/165 |
8 | bta-mir-29d | Bos taurus | bta-miR-29d | 22/22 | chr16 | + | 54-75 | N/A | - | miRBase_13_0 | 28/46 | 6/165 |
9 | bta-mir-29e | Bos taurus | bta-miR-29e | 24/24 | chr16 | + | 52-75 | N/A | - | miRBase_13_0 | 28/46 | 6/165 |
10 | bfl-mir-29a | Branchiostoma floridae | bfl-miR-29a | 23/23 | N/A | N/A | 61-83 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
11 | bfl-mir-29b | Branchiostoma floridae | bfl-miR-29b | 23/23 | N/A | N/A | 63-85 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
12 | cfa-mir-29a | Canis familiaris | cfa-miR-29a | 22/22 | chr14 | + | 39-60 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
13 | cfa-mir-29b-1 | Canis familiaris | cfa-miR-29b | 23/23 | chr14 | + | 43-65 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
14 | cfa-mir-29b-2 | Canis familiaris | cfa-miR-29b | 23/23 | chr7 | - | 44-66 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
15 | cfa-mir-29c | Canis familiaris | cfa-miR-29c | 22/22 | chr7 | - | 37-58 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
16 | cap-mir-29a | Capitella sp. | cap-miR-29a | 22/22 | scaffold_794 | - | 61-82 | N/A | - | miRBase_13_0 | 28/46 | 2/165 |
17 | cap-mir-29b | Capitella sp. | cap-miR-29b | 21/21 | scaffold_794 | - | 61-81 | N/A | - | miRBase_13_0 | 28/46 | 2/165 |
18 | dre-mir-29a-1 | Danio rerio | dre-miR-29a | 22/22 | chr4 | - | 81-102 | N/A | - | miRBase_13_0 | 28/46 | 5/165 |
19 | dre-mir-29a-2 | Danio rerio | dre-miR-29a | 22/22 | chr23 | - | 45-66 | N/A | - | miRBase_13_0 | 28/46 | 5/165 |
20 | dre-mir-29b-1 | Danio rerio | dre-miR-29b | 22/22 | chr6 | - | 52-73 | N/A | - | miRBase_13_0 | 28/46 | 5/165 |
21 | dre-mir-29b-2 | Danio rerio | dre-miR-29b | 22/22 | chr23 | - | 56-77 | N/A | - | miRBase_13_0 | 28/46 | 5/165 |
22 | dre-mir-29b-3 | Danio rerio | dre-miR-29b | 22/22 | chr4 | - | 55-76 | N/A | - | miRBase_13_0 | 28/46 | 5/165 |
23 | fru-mir-29a-1 | Fugu rubripes | fru-miR-29a | 22/22 | scaffold_325 | + | 45-66 | N/A | - | miRBase_13_0 | 28/46 | 5/165 |
24 | fru-mir-29a-2 | Fugu rubripes | fru-miR-29a | 22/22 | scaffold_371 | - | 84-105 | N/A | - | miRBase_13_0 | 28/46 | 5/165 |
25 | fru-mir-29b-1 | Fugu rubripes | fru-miR-29b | 22/22 | scaffold_371 | - | 50-71 | N/A | - | miRBase_13_0 | 28/46 | 5/165 |
26 | fru-mir-29b-2 | Fugu rubripes | fru-miR-29b | 22/22 | scaffold_325 | + | 45-66 | N/A | - | miRBase_13_0 | 28/46 | 5/165 |
27 | gga-mir-29a | Gallus gallus | gga-miR-29a | 21/21 | chr1 | + | 55-75 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
28 | gga-mir-29b-1 | Gallus gallus | gga-miR-29b | 23/23 | chr1 | + | 51-73 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
29 | gga-mir-29b-2 | Gallus gallus | gga-miR-29b | 23/23 | chr26 | - | 51-73 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
30 | gga-mir-29c | Gallus gallus | gga-miR-29c | 20/20 | chr26 | - | 55-74 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
31 | ggo-mir-29a | Gorilla gorilla | ggo-miR-29a | 22/22 | N/A | N/A | 41-62 | N/A | - | miRBase_13_0 | 28/46 | 3/165 |
32 | ggo-mir-29b-1 | Gorilla gorilla | ggo-miR-29b | 20/20 | N/A | N/A | 51-70 | N/A | - | miRBase_13_0 | 28/46 | 3/165 |
33 | ggo-mir-29b-2 | Gorilla gorilla | ggo-miR-29b | 20/20 | N/A | N/A | 52-71 | N/A | - | miRBase_13_0 | 28/46 | 3/165 |
34 | hsa-mir-29a | Homo sapiens | hsa-miR-29a | 22/22 | chr7 | - | 42-63 | 130212046-130212109 | - | miRBase_13_0 | 28/46 | 4/165 |
35 | hsa-mir-29a | Homo sapiens | hsa-miR-29a* | 22/22 | chr7 | - | 4-25 | 130212046-130212109 | - | miRBase_13_0 | 28/46 | 4/165 |
36 | hsa-mir-29b-1 | Homo sapiens | hsa-miR-29b | 23/23 | chr7 | - | 51-73 | 130212758-130212838 | - | miRBase_13_0 | 28/46 | 4/165 |
37 | hsa-mir-29b-1 | Homo sapiens | hsa-miR-29b-1* | 24/24 | chr7 | - | 10-33 | 130212758-130212838 | - | miRBase_13_0 | 28/46 | 4/165 |
38 | hsa-mir-29b-2 | Homo sapiens | hsa-miR-29b | 23/23 | chr1 | - | 52-74 | 206042411-206042491 | - | miRBase_13_0 | 28/46 | 4/165 |
39 | hsa-mir-29b-2 | Homo sapiens | hsa-miR-29b-2* | 22/22 | chr1 | - | 11-32 | 206042411-206042491 | - | miRBase_13_0 | 28/46 | 4/165 |
40 | hsa-mir-29c | Homo sapiens | hsa-miR-29c* | 22/22 | chr1 | - | 16-37 | 206041820-206041907 | - | miRBase_13_0 | 28/46 | 4/165 |
41 | hsa-mir-29c | Homo sapiens | hsa-miR-29c | 22/22 | chr1 | - | 54-75 | 206041820-206041907 | - | miRBase_13_0 | 28/46 | 4/165 |
42 | lla-mir-29a | Lagothrix lagotricha | lla-miR-29a | 22/22 | N/A | N/A | 41-62 | N/A | - | miRBase_13_0 | 28/46 | 2/165 |
43 | lla-mir-29b | Lagothrix lagotricha | lla-miR-29b | 20/20 | N/A | N/A | 51-70 | N/A | - | miRBase_13_0 | 28/46 | 2/165 |
44 | lgi-mir-29 | Lottia gigantea | lgi-miR-29 | 22/22 | sca_4 | + | 61-82 | N/A | - | miRBase_13_0 | 28/46 | 1/165 |
45 | mml-mir-29a | Macaca mulatta | mml-miR-29a | 22/22 | chr3 | - | 41-62 | N/A | - | miRBase_13_0 | 28/46 | 5/165 |
46 | mml-mir-29b-1 | Macaca mulatta | mml-miR-29b | 23/23 | chr3 | - | 51-73 | N/A | - | miRBase_13_0 | 28/46 | 5/165 |
47 | mml-mir-29b-2 | Macaca mulatta | mml-miR-29b | 23/23 | chr1 | + | 52-74 | N/A | - | miRBase_13_0 | 28/46 | 5/165 |
48 | mml-mir-29c | Macaca mulatta | mml-miR-29c | 22/22 | chr1 | + | 54-75 | N/A | - | miRBase_13_0 | 28/46 | 5/165 |
49 | mne-mir-29a | Macaca nemestrina | mne-miR-29a | 22/22 | N/A | N/A | 41-62 | N/A | - | miRBase_13_0 | 28/46 | 2/165 |
50 | mne-mir-29b | Macaca nemestrina | mne-miR-29b | 20/20 | N/A | N/A | 52-71 | N/A | - | miRBase_13_0 | 28/46 | 2/165 |
51 | mdo-mir-29a | Monodelphis domestica | mdo-miR-29a | 20/20 | chr8 | - | 42-61 | N/A | - | miRBase_13_0 | 28/46 | 6/165 |
52 | mdo-mir-29b | Monodelphis domestica | mdo-miR-29b | 20/20 | chr8 | - | 55-74 | N/A | - | miRBase_13_0 | 28/46 | 6/165 |
53 | mmu-mir-29a | Mus musculus | mmu-miR-29a | 22/22 | chr6 | - | 54-75 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
54 | mmu-mir-29a | Mus musculus | mmu-miR-29a* | 22/22 | chr6 | - | 16-37 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
55 | mmu-mir-29b-1 | Mus musculus | mmu-miR-29b* | 22/22 | chr6 | - | 6-27 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
56 | mmu-mir-29b-1 | Mus musculus | mmu-miR-29b | 23/23 | chr6 | - | 47-69 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
57 | mmu-mir-29b-2 | Mus musculus | mmu-miR-29b | 23/23 | chr1 | + | 52-74 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
58 | mmu-mir-29c | Mus musculus | mmu-miR-29c | 22/22 | chr1 | + | 54-75 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
59 | mmu-mir-29c | Mus musculus | mmu-miR-29c* | 22/22 | chr1 | + | 16-37 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
60 | oan-mir-29a-1 | Ornithorhynchus anatinus | oan-miR-29a-1* | 22/22 | chr10 | - | 32-53 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
61 | oan-mir-29a-1 | Ornithorhynchus anatinus | oan-miR-29a | 21/21 | chr10 | - | 70-90 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
62 | oan-mir-29a-2 | Ornithorhynchus anatinus | oan-miR-29a-2* | 21/21 | chr7 | - | 24-44 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
63 | oan-mir-29a-2 | Ornithorhynchus anatinus | oan-miR-29a | 21/21 | chr7 | - | 64-84 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
64 | oan-mir-29b | Ornithorhynchus anatinus | oan-miR-29b* | 22/22 | chr10 | - | 36-57 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
65 | oan-mir-29b | Ornithorhynchus anatinus | oan-miR-29b | 22/22 | chr10 | - | 76-97 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
66 | ppa-mir-29a | Pan paniscus | ppa-miR-29a | 22/22 | N/A | N/A | 41-62 | N/A | - | miRBase_13_0 | 28/46 | 3/165 |
67 | ppa-mir-29b-1 | Pan paniscus | ppa-miR-29b | 20/20 | N/A | N/A | 51-70 | N/A | - | miRBase_13_0 | 28/46 | 3/165 |
68 | ppa-mir-29b-2 | Pan paniscus | ppa-miR-29b | 20/20 | N/A | N/A | 52-71 | N/A | - | miRBase_13_0 | 28/46 | 3/165 |
69 | ptr-mir-29a | Pan troglodytes | ptr-miR-29a | 22/22 | N/A | N/A | 41-62 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
70 | ptr-mir-29b-1 | Pan troglodytes | ptr-miR-29b | 20/20 | chr7 | - | 51-70 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
71 | ptr-mir-29b-2 | Pan troglodytes | ptr-miR-29b | 20/20 | chr1 | - | 52-71 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
72 | ptr-mir-29c | Pan troglodytes | ptr-miR-29c | 22/22 | chr1 | - | 54-75 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
73 | ppy-mir-29a | Pongo pygmaeus | ppy-miR-29a | 22/22 | N/A | N/A | 41-62 | N/A | - | miRBase_13_0 | 28/46 | 3/165 |
74 | ppy-mir-29b-1 | Pongo pygmaeus | ppy-miR-29b | 20/20 | N/A | N/A | 51-70 | N/A | - | miRBase_13_0 | 28/46 | 3/165 |
75 | ppy-mir-29b-2 | Pongo pygmaeus | ppy-miR-29b | 20/20 | N/A | N/A | 52-71 | N/A | - | miRBase_13_0 | 28/46 | 3/165 |
76 | rno-mir-29a | Rattus norvegicus | rno-miR-29a* | 22/22 | chr4 | - | 16-37 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
77 | rno-mir-29a | Rattus norvegicus | rno-miR-29a | 22/22 | chr4 | - | 54-75 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
78 | rno-mir-29b-1 | Rattus norvegicus | rno-miR-29b-1* | 22/22 | chr4 | - | 15-36 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
79 | rno-mir-29b-1 | Rattus norvegicus | rno-miR-29b | 23/23 | chr4 | - | 51-73 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
80 | rno-mir-29b-2 | Rattus norvegicus | rno-miR-29b | 23/23 | chr13 | + | 52-74 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
81 | rno-mir-29b-2 | Rattus norvegicus | rno-miR-29b-2* | 22/22 | chr13 | + | 11-32 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
82 | rno-mir-29c | Rattus norvegicus | rno-miR-29c | 22/22 | chr13 | + | 54-75 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
83 | rno-mir-29c | Rattus norvegicus | rno-miR-29c* | 22/22 | chr13 | + | 16-37 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
84 | sko-mir-29a | Saccoglossus kowalevskii | sko-miR-29a | 22/22 | N/A | N/A | 61-82 | N/A | - | miRBase_13_0 | 28/46 | 2/165 |
85 | sko-mir-29b | Saccoglossus kowalevskii | sko-miR-29b | 22/22 | N/A | N/A | 61-82 | N/A | - | miRBase_13_0 | 28/46 | 2/165 |
86 | sla-mir-29a | Saguinus labiatus | sla-miR-29a | 22/22 | N/A | N/A | 41-62 | N/A | - | miRBase_13_0 | 28/46 | 2/165 |
87 | sla-mir-29b | Saguinus labiatus | sla-miR-29b | 20/20 | N/A | N/A | 52-71 | N/A | - | miRBase_13_0 | 28/46 | 2/165 |
88 | spu-mir-29 | Strongylocentrotus purpuratus | spu-miR-29 | 22/22 | N/A | N/A | 61-82 | N/A | - | miRBase_13_0 | 28/46 | 1/165 |
89 | ssc-mir-29b | Sus scrofa | ssc-miR-29b | 20/20 | chr18 | + | 51-70 | N/A | - | miRBase_13_0 | 28/46 | 2/165 |
90 | ssc-mir-29c | Sus scrofa | ssc-miR-29c | 22/22 | N/A | N/A | 54-75 | N/A | - | miRBase_13_0 | 28/46 | 2/165 |
91 | tni-mir-29a-1 | Tetraodon nigroviridis | tni-miR-29a | 22/22 | chr9 | + | 45-66 | N/A | - | miRBase_13_0 | 28/46 | 6/165 |
92 | tni-mir-29a-2 | Tetraodon nigroviridis | tni-miR-29a | 22/22 | chrUn_random | + | 60-81 | N/A | - | miRBase_13_0 | 28/46 | 6/165 |
93 | tni-mir-29b-1 | Tetraodon nigroviridis | tni-miR-29b | 22/22 | chrUn_random | + | 50-71 | N/A | - | miRBase_13_0 | 28/46 | 6/165 |
94 | tni-mir-29b-2 | Tetraodon nigroviridis | tni-miR-29b | 22/22 | chr9 | + | 49-70 | N/A | - | miRBase_13_0 | 28/46 | 6/165 |
95 | xtr-mir-29a | Xenopus tropicalis | xtr-miR-29a | 21/21 | scaffold_11 | + | 53-73 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
96 | xtr-mir-29b | Xenopus tropicalis | xtr-miR-29b | 23/23 | scaffold_373 | + | 51-73 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
97 | xtr-mir-29c | Xenopus tropicalis | xtr-miR-29c* | 22/22 | scaffold_373 | + | 15-36 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
98 | xtr-mir-29c | Xenopus tropicalis | xtr-miR-29c | 20/20 | scaffold_373 | + | 56-75 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
99 | xtr-mir-29d | Xenopus tropicalis | xtr-miR-29d | 23/23 | scaffold_11 | + | 49-71 | N/A | - | miRBase_13_0 | 28/46 | 4/165 |
Total | 99 record(s). |