- Evo_source
- “Evo_source” column indicates that whether this record is a known precursor miRNA (pre-mir) from miRBase 13.0, an orthologous pre-mir highly similar to pre-mirs from other species or a paralogous pre-mir highly similar to pre-mirs from own species.
- Species_No
- In “Species_No” column, the value “a/b” indicates that a out of 86 (22+34+30) species are known to encode this pre-mir class and b out of 86 species are known or predicted to encode this pre-miR class.
- Distribution
- In “Distribution” column, the value “c/d” indicates that c pre-mirs in this own species belong to this pre-mir class and that d pre-mirs in all 86 (22+34+30) species belong to this pre-mir class.
Index | ID | Species | Mature miRNA (MatMiR) |
Match/ MatMiR Length |
Chrom | Strand | MatMiR Position |
PreMir Position |
Confidence | Evo_ Source |
Species_ No |
Distribution |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | anoCar1-207 | Anolis carolinensis | dre-miR-301a | 21/22 | scaffold_348 | + | 51-72 | 576764-576848 | 0.976919 | Ortholog | 14/32 | 1/60 |
2 | anoCar1-207 | Anolis carolinensis | gga-miR-301 | 25/25 | scaffold_348 | + | 49-73 | 576766-576846 | 0.949101 | Ortholog | 14/32 | 1/60 |
3 | calJac1-386 | Callithrix jacchus | ssc-miR-301 | 22/23 | Contig3325 | + | 50-72 | 264985-265068 | 0.890663 | Ortholog | 14/32 | 2/60 |
4 | calJac1-386 | Callithrix jacchus | dre-miR-301a | 22/22 | Contig3325 | + | 50-71 | 264985-265068 | 0.922636 | Ortholog | 14/32 | 2/60 |
5 | calJac1-386 | Callithrix jacchus | gga-miR-301b-3p | 25/25 | Contig3325 | + | 49-73 | 264986-265067 | 0.922281 | Ortholog | 14/32 | 2/60 |
6 | calJac1-459 | Callithrix jacchus | bta-miR-301b | 25/25 | Contig4170 | - | 48-72 | 176850-176931 | 0.9908 | Ortholog | 14/32 | 2/60 |
7 | calJac1-459 | Callithrix jacchus | hsa-miR-301b | 23/23 | Contig4170 | - | 49-71 | 176849-176932 | 0.989403 | Ortholog | 14/32 | 2/60 |
8 | cavPor3-466 | Cavia porcellus | dre-miR-301a | 22/22 | scaffold_32 | - | 49-70 | 7094150-7094231 | 0.951367 | Ortholog | 14/32 | 2/60 |
9 | cavPor3-466 | Cavia porcellus | ssc-miR-301 | 22/23 | scaffold_32 | - | 49-71 | 7094150-7094231 | 0.931001 | Ortholog | 14/32 | 2/60 |
10 | cavPor3-466 | Cavia porcellus | gga-miR-301b-3p | 25/25 | scaffold_32 | - | 48-72 | 7094151-7094230 | 0.93874 | Ortholog | 14/32 | 2/60 |
11 | cavPor3-518 | Cavia porcellus | dre-miR-301a | 20/22 | scaffold_4 | + | 51-72 | 19664318-19664408 | 0.999486 | Ortholog | 14/32 | 2/60 |
12 | dasNov1-323 | Dasypus novemcinctus | gga-miR-301 | 23/25 | scaffold_6429 | + | 38-61 | N/A | 0.959962 | Ortholog | 14/32 | 1/60 |
13 | dasNov1-323 | Dasypus novemcinctus | dre-miR-301a | 22/22 | scaffold_6429 | + | 38-59 | N/A | 0.982526 | Ortholog | 14/32 | 1/60 |
14 | dasNov1-323 | Dasypus novemcinctus | ssc-miR-301 | 22/23 | scaffold_6429 | + | 38-60 | N/A | 0.976932 | Ortholog | 14/32 | 1/60 |
15 | echTel1-380 | Echinops telfari | dre-miR-301a | 22/22 | scaffold_323493 | - | 49-70 | N/A | 0.951367 | Ortholog | 14/32 | 1/60 |
16 | echTel1-380 | Echinops telfari | ssc-miR-301 | 22/23 | scaffold_323493 | - | 49-71 | N/A | 0.931001 | Ortholog | 14/32 | 1/60 |
17 | echTel1-380 | Echinops telfari | gga-miR-301b-3p | 25/25 | scaffold_323493 | - | 48-72 | N/A | 0.93874 | Ortholog | 14/32 | 1/60 |
18 | equCab1-560 | Equus caballus | bta-miR-301b | 25/25 | chr8 | + | 49-73 | 3232618-3232701 | 0.999651 | Ortholog | 14/32 | 2/60 |
19 | equCab1-560 | Equus caballus | hsa-miR-301b | 23/23 | chr8 | + | 49-71 | 3232618-3232701 | 0.999496 | Ortholog | 14/32 | 2/60 |
20 | equCab1-560 | Equus caballus | dre-miR-301a | 20/22 | chr8 | + | 51-72 | 3232616-3232706 | 0.999611 | Ortholog | 14/32 | 2/60 |
21 | equCab1-70 | Equus caballus | dre-miR-301a | 22/22 | chr11 | - | 49-70 | 32037047-32037128 | 0.951367 | Ortholog | 14/32 | 2/60 |
22 | equCab1-70 | Equus caballus | ssc-miR-301 | 22/23 | chr11 | - | 49-71 | 32037047-32037128 | 0.931001 | Ortholog | 14/32 | 2/60 |
23 | equCab1-70 | Equus caballus | gga-miR-301b-5p | 22/22 | chr11 | - | 13-34 | 32037046-32037129 | 0.837703 | Ortholog | 14/32 | 2/60 |
24 | equCab1-70 | Equus caballus | gga-miR-301b-3p | 25/25 | chr11 | - | 48-72 | 32037048-32037127 | 0.93874 | Ortholog | 14/32 | 2/60 |
25 | eriEur1-116 | Erinaceus europaeus | oan-miR-301* | 21/21 | scaffold_321302 | + | 11-31 | N/A | 0.934461 | Ortholog | 14/32 | 2/60 |
26 | eriEur1-116 | Erinaceus europaeus | gga-miR-301b-3p | 25/25 | scaffold_321302 | + | 49-73 | N/A | 0.939462 | Ortholog | 14/32 | 2/60 |
27 | eriEur1-116 | Erinaceus europaeus | gga-miR-301b-5p | 22/22 | scaffold_321302 | + | 11-32 | N/A | 0.945727 | Ortholog | 14/32 | 2/60 |
28 | eriEur1-116 | Erinaceus europaeus | ssc-miR-301 | 22/23 | scaffold_321302 | + | 50-72 | N/A | 0.890663 | Ortholog | 14/32 | 2/60 |
29 | eriEur1-116 | Erinaceus europaeus | dre-miR-301a | 22/22 | scaffold_321302 | + | 50-71 | N/A | 0.922636 | Ortholog | 14/32 | 2/60 |
30 | eriEur1-67 | Erinaceus europaeus | hsa-miR-301b | 23/23 | scaffold_263489 | - | 49-71 | N/A | 0.987683 | Ortholog | 14/32 | 2/60 |
31 | eriEur1-67 | Erinaceus europaeus | bta-miR-301b | 25/25 | scaffold_263489 | - | 48-72 | N/A | 0.991363 | Ortholog | 14/32 | 2/60 |
32 | gasAcu1-346 | Gasterosteus aculeatus | gga-miR-301b-3p | 25/25 | chrVII | - | 48-72 | 12552010-12552088 | 0.940373 | Ortholog | 14/32 | 2/60 |
33 | gasAcu1-346 | Gasterosteus aculeatus | dre-miR-301a | 22/22 | chrVII | - | 49-70 | 12552009-12552089 | 0.966138 | Ortholog | 14/32 | 2/60 |
34 | gasAcu1-346 | Gasterosteus aculeatus | ssc-miR-301 | 22/23 | chrVII | - | 49-71 | 12552009-12552089 | 0.948327 | Ortholog | 14/32 | 2/60 |
35 | gasAcu1-540 | Gasterosteus aculeatus | gga-miR-301 | 23/25 | chrXIV | - | 48-72 | 7045981-7046071 | 0.913166 | Ortholog | 14/32 | 2/60 |
36 | gasAcu1-540 | Gasterosteus aculeatus | ssc-miR-301 | 21/23 | chrXIV | - | 48-70 | 7045981-7046071 | 0.871805 | Ortholog | 14/32 | 2/60 |
37 | gasAcu1-540 | Gasterosteus aculeatus | dre-miR-301c | 22/22 | chrXIV | - | 48-69 | 7045981-7046071 | 0.919594 | Ortholog | 14/32 | 2/60 |
38 | loxAfr1-122 | Loxodonta africana | hsa-miR-301b | 23/23 | scaffold_199056 | + | 48-70 | N/A | 0.999241 | Ortholog | 14/32 | 2/60 |
39 | loxAfr1-122 | Loxodonta africana | bta-miR-301b | 25/25 | scaffold_199056 | + | 48-72 | N/A | 0.999475 | Ortholog | 14/32 | 2/60 |
40 | loxAfr1-387 | Loxodonta africana | ssc-miR-301 | 22/23 | scaffold_76652 | - | 49-71 | N/A | 0.931001 | Ortholog | 14/32 | 2/60 |
41 | loxAfr1-387 | Loxodonta africana | gga-miR-301b-3p | 25/25 | scaffold_76652 | - | 48-72 | N/A | 0.93874 | Ortholog | 14/32 | 2/60 |
42 | loxAfr1-387 | Loxodonta africana | dre-miR-301a | 22/22 | scaffold_76652 | - | 49-70 | N/A | 0.951367 | Ortholog | 14/32 | 2/60 |
43 | loxAfr1-387 | Loxodonta africana | gga-miR-301b-5p | 22/22 | scaffold_76652 | - | 13-34 | N/A | 0.837703 | Ortholog | 14/32 | 2/60 |
44 | monDom4-122 | Monodelphis domestica | dre-miR-301a | 22/22 | chr2 | + | 50-71 | 172986775-172986858 | 0.922636 | Ortholog | 14/32 | 1/60 |
45 | monDom4-122 | Monodelphis domestica | ssc-miR-301 | 22/23 | chr2 | + | 50-72 | 172986775-172986858 | 0.890663 | Ortholog | 14/32 | 1/60 |
46 | monDom4-122 | Monodelphis domestica | gga-miR-301b-3p | 25/25 | chr2 | + | 49-73 | 172986776-172986857 | 0.922281 | Ortholog | 14/32 | 1/60 |
47 | oryCun1-423 | Oryctolagus cuniculus | bta-miR-301b | 25/25 | scaffold_208114 | - | 48-72 | N/A | 0.99753 | Ortholog | 14/32 | 2/60 |
48 | oryCun1-423 | Oryctolagus cuniculus | hsa-miR-301b | 23/23 | scaffold_208114 | - | 49-71 | N/A | 0.997197 | Ortholog | 14/32 | 2/60 |
49 | oryCun1-449 | Oryctolagus cuniculus | oan-miR-301* | 21/21 | scaffold_211061 | + | 11-31 | N/A | 0.914772 | Ortholog | 14/32 | 2/60 |
50 | oryCun1-449 | Oryctolagus cuniculus | hsa-miR-301b | 21/23 | scaffold_211061 | + | 50-72 | N/A | 0.890663 | Ortholog | 14/32 | 2/60 |
51 | oryCun1-449 | Oryctolagus cuniculus | gga-miR-301b-5p | 22/22 | scaffold_211061 | + | 11-32 | N/A | 0.931411 | Ortholog | 14/32 | 2/60 |
52 | oryCun1-449 | Oryctolagus cuniculus | bta-miR-301b | 23/25 | scaffold_211061 | + | 49-73 | N/A | 0.922281 | Ortholog | 14/32 | 2/60 |
53 | oryCun1-449 | Oryctolagus cuniculus | dre-miR-301c | 21/22 | scaffold_211061 | + | 50-71 | N/A | 0.922636 | Ortholog | 14/32 | 2/60 |
54 | oryLat2-102 | Oryzias latipes | gga-miR-301b-3p | 24/25 | chr14 | + | 50-73 | 13145547-13145629 | 0.990777 | Ortholog | 14/32 | 2/60 |
55 | oryLat2-102 | Oryzias latipes | dre-miR-301c | 20/22 | chr14 | + | 51-71 | 13145546-13145629 | 0.991209 | Ortholog | 14/32 | 2/60 |
56 | oryLat2-102 | Oryzias latipes | oan-miR-301* | 20/21 | chr14 | + | 11-31 | 13145548-13145627 | 0.956411 | Ortholog | 14/32 | 2/60 |
57 | oryLat2-102 | Oryzias latipes | gga-miR-301b-5p | 21/22 | chr14 | + | 11-32 | 13145548-13145627 | 0.969918 | Ortholog | 14/32 | 2/60 |
58 | oryLat2-102 | Oryzias latipes | mmu-miR-301b | 21/23 | chr14 | + | 51-72 | 13145546-13145629 | 0.98804 | Ortholog | 14/32 | 2/60 |
59 | oryLat2-64 | Oryzias latipes | dre-miR-301b | 20/22 | chr12 | - | 50-69 | 14199749-14199831 | 0.995345 | Ortholog | 14/32 | 2/60 |
60 | otoGar1-304 | Otolemur garnettii | gga-miR-301b-3p | 25/25 | scaffold_36005.1-1131 | - | 48-72 | N/A | 0.93874 | Ortholog | 14/32 | 2/60 |
61 | otoGar1-304 | Otolemur garnettii | dre-miR-301a | 22/22 | scaffold_36005.1-1131 | - | 49-70 | N/A | 0.951367 | Ortholog | 14/32 | 2/60 |
62 | otoGar1-304 | Otolemur garnettii | ssc-miR-301 | 22/23 | scaffold_36005.1-1131 | - | 49-71 | N/A | 0.931001 | Ortholog | 14/32 | 2/60 |
63 | otoGar1-304 | Otolemur garnettii | gga-miR-301b-5p | 22/22 | scaffold_36005.1-1131 | - | 13-34 | N/A | 0.837703 | Ortholog | 14/32 | 2/60 |
64 | otoGar1-7 | Otolemur garnettii | bta-miR-301b | 25/25 | scaffold_102259.1-79246 | + | 49-73 | N/A | 0.99917 | Ortholog | 14/32 | 2/60 |
65 | otoGar1-7 | Otolemur garnettii | hsa-miR-301b | 23/23 | scaffold_102259.1-79246 | + | 49-71 | N/A | 0.998787 | Ortholog | 14/32 | 2/60 |
66 | petMar1-109 | Petromyzon marinus | ssc-miR-301 | 21/23 | Contig8171 | - | 49-71 | 8619-8698 | 0.999311 | Ortholog | 14/32 | 2/60 |
67 | petMar1-109 | Petromyzon marinus | dre-miR-301a | 21/22 | Contig8171 | - | 49-70 | 8619-8698 | 0.999521 | Ortholog | 14/32 | 2/60 |
68 | petMar1-109 | Petromyzon marinus | gga-miR-301 | 23/25 | Contig8171 | - | 48-72 | 8620-8697 | 0.998385 | Ortholog | 14/32 | 2/60 |
69 | petMar1-41 | Petromyzon marinus | dre-miR-301a | 21/22 | Contig1898 | - | 49-70 | 3658-3739 | 0.999364 | Ortholog | 14/32 | 2/60 |
70 | petMar1-41 | Petromyzon marinus | ssc-miR-301 | 21/23 | Contig1898 | - | 49-71 | 3658-3739 | 0.999038 | Ortholog | 14/32 | 2/60 |
71 | ponAbe2-315 | Pongo abelii | dre-miR-301a | 22/22 | chr17_random | + | 50-71 | 2439983-2440066 | 0.922636 | Ortholog | 14/32 | 2/60 |
72 | ponAbe2-315 | Pongo abelii | ssc-miR-301 | 22/23 | chr17_random | + | 50-72 | 2439983-2440066 | 0.890663 | Ortholog | 14/32 | 2/60 |
73 | ponAbe2-315 | Pongo abelii | gga-miR-301b-3p | 25/25 | chr17_random | + | 49-73 | 2439984-2440065 | 0.922281 | Ortholog | 14/32 | 2/60 |
74 | ponAbe2-520 | Pongo abelii | bta-miR-301b | 25/25 | chr22 | + | 49-73 | 16950342-16950425 | 0.999484 | Ortholog | 14/32 | 2/60 |
75 | ponAbe2-520 | Pongo abelii | hsa-miR-301b | 23/23 | chr22 | + | 49-71 | 16950342-16950425 | 0.999256 | Ortholog | 14/32 | 2/60 |
76 | sorAra1-224 | Sorex araneus | gga-miR-301b-3p | 25/25 | scaffold_261504 | + | 49-73 | N/A | 0.939462 | Ortholog | 14/32 | 1/60 |
77 | sorAra1-224 | Sorex araneus | ssc-miR-301 | 22/23 | scaffold_261504 | + | 50-72 | N/A | 0.890663 | Ortholog | 14/32 | 1/60 |
78 | sorAra1-224 | Sorex araneus | gga-miR-301b-5p | 22/22 | scaffold_261504 | + | 11-32 | N/A | 0.945727 | Ortholog | 14/32 | 1/60 |
79 | sorAra1-224 | Sorex araneus | oan-miR-301* | 21/21 | scaffold_261504 | + | 11-31 | N/A | 0.934461 | Ortholog | 14/32 | 1/60 |
80 | sorAra1-224 | Sorex araneus | dre-miR-301a | 22/22 | scaffold_261504 | + | 50-71 | N/A | 0.922636 | Ortholog | 14/32 | 1/60 |
81 | taeGut1-120 | Taeniopygia guttata | gga-miR-301b-3p | 25/25 | chr19 | - | 49-73 | 8783987-8784068 | 0.947894 | Ortholog | 14/32 | 3/60 |
82 | taeGut1-120 | Taeniopygia guttata | dre-miR-301a | 22/22 | chr19 | - | 49-70 | 8783988-8784069 | 0.949385 | Ortholog | 14/32 | 3/60 |
83 | taeGut1-120 | Taeniopygia guttata | gga-miR-301b-5p | 22/22 | chr19 | - | 16-37 | 8783987-8784073 | 0.86248 | Ortholog | 14/32 | 3/60 |
84 | taeGut1-120 | Taeniopygia guttata | oan-miR-301* | 21/21 | chr19 | - | 15-35 | 8783988-8784072 | 0.860859 | Ortholog | 14/32 | 3/60 |
85 | taeGut1-120 | Taeniopygia guttata | ssc-miR-301 | 22/23 | chr19 | - | 48-70 | 8783988-8784069 | 0.939608 | Ortholog | 14/32 | 3/60 |
86 | taeGut1-287 | Taeniopygia guttata | dre-miR-301a | 20/22 | chr5 | + | 51-72 | 44097358-44097433 | 0.969767 | Ortholog | 14/32 | 3/60 |
87 | taeGut1-79 | Taeniopygia guttata | dre-miR-301a | 21/22 | chr15 | + | 51-72 | 8480152-8480236 | 0.880336 | Ortholog | 14/32 | 3/60 |
88 | taeGut1-79 | Taeniopygia guttata | ssc-miR-301 | 21/23 | chr15 | + | 50-72 | 8480153-8480235 | 0.866381 | Ortholog | 14/32 | 3/60 |
89 | taeGut1-79 | Taeniopygia guttata | gga-miR-301 | 25/25 | chr15 | + | 49-73 | 8480154-8480234 | 0.878814 | Ortholog | 14/32 | 3/60 |
90 | tupBel1-1490 | Tupaia belangeri | dre-miR-301a | 22/22 | scaffold_15828.1-546815 | - | 49-70 | N/A | 0.951367 | Ortholog | 14/32 | 1/60 |
91 | tupBel1-1490 | Tupaia belangeri | ssc-miR-301 | 22/23 | scaffold_15828.1-546815 | - | 49-71 | N/A | 0.931001 | Ortholog | 14/32 | 1/60 |
92 | tupBel1-1490 | Tupaia belangeri | gga-miR-301b-3p | 25/25 | scaffold_15828.1-546815 | - | 48-72 | N/A | 0.93874 | Ortholog | 14/32 | 1/60 |
Total | 92 record(s). |