- Evo_source
- “Evo_source” column indicates that whether this record is a known precursor miRNA (pre-mir) from miRBase 13.0, an orthologous pre-mir highly similar to pre-mirs from other species or a paralogous pre-mir highly similar to pre-mirs from own species.
- Species_No
- In “Species_No” column, the value “a/b” indicates that a out of 86 (22+34+30) species are known to encode this pre-mir class and b out of 86 species are known or predicted to encode this pre-miR class.
- Distribution
- In “Distribution” column, the value “c/d” indicates that c pre-mirs in this own species belong to this pre-mir class and that d pre-mirs in all 86 (22+34+30) species belong to this pre-mir class.
Index | ID | Species | Mature miRNA (MatMiR) |
Match/ MatMiR Length |
Chrom | Strand | MatMiR Position |
PreMir Position |
Confidence | Evo_ Source |
Species_ No |
Distribution |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | calJac1-436 | Callithrix jacchus | rno-miR-339-5p | 22/23 | Contig3862 | + | 49-70 | 166130-166216 | 0.925232 | Ortholog | 6/16 | 2/25 |
2 | calJac1-436 | Callithrix jacchus | bta-miR-339 | 21/22 | Contig3862 | + | 49-69 | 166130-166216 | 0.945519 | Ortholog | 6/16 | 2/25 |
3 | calJac1-44 | Callithrix jacchus | rno-miR-339-5p | 23/23 | Contig1220 | - | 16-38 | 337182-337268 | 0.981373 | Ortholog | 6/16 | 2/25 |
4 | calJac1-44 | Callithrix jacchus | hsa-miR-339-3p | 23/23 | Contig1220 | - | 49-71 | 337185-337266 | 0.936799 | Ortholog | 6/16 | 2/25 |
5 | calJac1-44 | Callithrix jacchus | ptr-miR-339 | 22/22 | Contig1220 | - | 49-70 | 337185-337266 | 0.953992 | Ortholog | 6/16 | 2/25 |
6 | calJac1-44 | Callithrix jacchus | bta-miR-339 | 22/22 | Contig1220 | - | 16-37 | 337182-337268 | 0.98603 | Ortholog | 6/16 | 2/25 |
7 | canFam2-114 | Canis familiaris | rno-miR-339-5p | 21/23 | chr2 | + | 7-29 | 84110236-84110312 | 0.881493 | Ortholog | 6/16 | 4/25 |
8 | canFam2-249 | Canis familiaris | bta-miR-339 | 21/22 | chr5 | - | 27-48 | 56032565-56032662 | 0.852537 | Ortholog | 6/16 | 4/25 |
9 | canFam2-253 | Canis familiaris | bta-miR-339 | 22/22 | chr6 | + | 12-33 | 18864308-18864385 | 0.985013 | Ortholog | 6/16 | 4/25 |
10 | canFam2-255 | Canis familiaris | bta-miR-339 | 20/22 | chr6 | + | 49-70 | 37664838-37664924 | 0.818281 | Ortholog | 6/16 | 4/25 |
11 | cavPor3-434 | Cavia porcellus | rno-miR-339-5p | 23/23 | scaffold_30 | + | 18-40 | 12803243-12803330 | 0.952379 | Ortholog | 6/16 | 2/25 |
12 | cavPor3-434 | Cavia porcellus | hsa-miR-339-3p | 22/23 | scaffold_30 | + | 50-72 | 12803246-12803331 | 0.953575 | Ortholog | 6/16 | 2/25 |
13 | cavPor3-434 | Cavia porcellus | ptr-miR-339 | 21/22 | scaffold_30 | + | 51-72 | 12803245-12803333 | 0.970254 | Ortholog | 6/16 | 2/25 |
14 | cavPor3-434 | Cavia porcellus | bta-miR-339 | 22/22 | scaffold_30 | + | 17-38 | 12803244-12803329 | 0.968294 | Ortholog | 6/16 | 2/25 |
15 | cavPor3-595 | Cavia porcellus | bta-miR-339 | 20/22 | scaffold_45 | - | 50-69 | 3943586-3943676 | 0.930395 | Ortholog | 6/16 | 2/25 |
16 | dasNov1-93 | Dasypus novemcinctus | rno-miR-339-5p | 23/23 | scaffold_180688 | + | 15-37 | N/A | 0.978591 | Ortholog | 6/16 | 1/25 |
17 | dasNov1-93 | Dasypus novemcinctus | bta-miR-339 | 22/22 | scaffold_180688 | + | 15-36 | N/A | 0.987142 | Ortholog | 6/16 | 1/25 |
18 | echTel1-189 | Echinops telfari | bta-miR-339 | 21/22 | scaffold_288016 | + | 51-71 | N/A | 0.917264 | Ortholog | 6/16 | 2/25 |
19 | echTel1-233 | Echinops telfari | bta-miR-339 | 20/22 | scaffold_299327 | - | 43-62 | N/A | 0.961852 | Ortholog | 6/16 | 2/25 |
20 | eriEur1-127 | Erinaceus europaeus | bta-miR-339 | 22/22 | scaffold_337001 | + | 16-37 | N/A | 0.989787 | Ortholog | 6/16 | 1/25 |
21 | oryCun1-68 | Oryctolagus cuniculus | bta-miR-339 | 22/22 | scaffold_133555 | - | 17-38 | N/A | 0.977958 | Ortholog | 6/16 | 1/25 |
22 | oryCun1-68 | Oryctolagus cuniculus | ptr-miR-339 | 22/22 | scaffold_133555 | - | 49-70 | N/A | 0.922579 | Ortholog | 6/16 | 1/25 |
23 | oryCun1-68 | Oryctolagus cuniculus | hsa-miR-339-3p | 23/23 | scaffold_133555 | - | 49-71 | N/A | 0.890938 | Ortholog | 6/16 | 1/25 |
24 | oryCun1-68 | Oryctolagus cuniculus | rno-miR-339-5p | 23/23 | scaffold_133555 | - | 17-39 | N/A | 0.969305 | Ortholog | 6/16 | 1/25 |
25 | otoGar1-207 | Otolemur garnettii | ptr-miR-339 | 22/22 | scaffold_117355.1-241851 | - | 49-70 | N/A | 0.84825 | Ortholog | 6/16 | 1/25 |
26 | otoGar1-207 | Otolemur garnettii | rno-miR-339-5p | 23/23 | scaffold_117355.1-241851 | - | 17-39 | N/A | 0.937386 | Ortholog | 6/16 | 1/25 |
27 | otoGar1-207 | Otolemur garnettii | bta-miR-339 | 22/22 | scaffold_117355.1-241851 | - | 17-38 | N/A | 0.955509 | Ortholog | 6/16 | 1/25 |
28 | ponAbe2-521 | Pongo abelii | bta-miR-339 | 21/22 | chr22 | + | 51-72 | 27113438-27113519 | 0.993547 | Ortholog | 6/16 | 3/25 |
29 | ponAbe2-607 | Pongo abelii | bta-miR-339 | 20/22 | chr4_random | + | 51-71 | 22506413-22506501 | 0.93829 | Ortholog | 6/16 | 3/25 |
30 | ponAbe2-680 | Pongo abelii | rno-miR-339-5p | 23/23 | chr7 | - | 14-36 | 906045-906128 | 0.980611 | Ortholog | 6/16 | 3/25 |
31 | ponAbe2-680 | Pongo abelii | bta-miR-339 | 22/22 | chr7 | - | 14-35 | 906045-906128 | 0.985661 | Ortholog | 6/16 | 3/25 |
32 | tupBel1-1495 | Tupaia belangeri | ptr-miR-339 | 22/22 | scaffold_16031.1-280255 | - | 49-70 | N/A | 0.909691 | Ortholog | 6/16 | 2/25 |
33 | tupBel1-1495 | Tupaia belangeri | hsa-miR-339-3p | 23/23 | scaffold_16031.1-280255 | - | 49-71 | N/A | 0.869571 | Ortholog | 6/16 | 2/25 |
34 | tupBel1-1495 | Tupaia belangeri | rno-miR-339-5p | 23/23 | scaffold_16031.1-280255 | - | 16-38 | N/A | 0.96223 | Ortholog | 6/16 | 2/25 |
35 | tupBel1-1495 | Tupaia belangeri | bta-miR-339 | 22/22 | scaffold_16031.1-280255 | - | 16-37 | N/A | 0.97369 | Ortholog | 6/16 | 2/25 |
36 | tupBel1-63 | Tupaia belangeri | bta-miR-339 | 20/22 | scaffold_109596.1-279293 | - | 17-36 | N/A | 0.997645 | Ortholog | 6/16 | 2/25 |
Total | 36 record(s). |