- Evo_source
- “Evo_source” column indicates that whether this record is a known precursor miRNA (pre-mir) from miRBase 13.0, an orthologous pre-mir highly similar to pre-mirs from other species or a paralogous pre-mir highly similar to pre-mirs from own species.
- Species_No
- In “Species_No” column, the value “a/b” indicates that a out of 86 (22+34+30) species are known to encode this pre-mir class and b out of 86 species are known or predicted to encode this pre-miR class.
- Distribution
- In “Distribution” column, the value “c/d” indicates that c pre-mirs in this own species belong to this pre-mir class and that d pre-mirs in all 86 (22+34+30) species belong to this pre-mir class.
Index | ID | Species | Mature miRNA (MatMiR) |
Match/ MatMiR Length |
Chrom | Strand | MatMiR Position |
PreMir Position |
Confidence | Evo_ Source |
Species_ No |
Distribution |
---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | anoCar1-362 | Anolis carolinensis | gga-miR-460 | 22/22 | scaffold_842 | - | 14-35 | 317367-317450 | 0.83773 | Ortholog | 5/12 | 1/19 |
2 | anoCar1-362 | Anolis carolinensis | oan-miR-460* | 20/21 | scaffold_842 | - | 50-70 | 317368-317449 | 0.875327 | Ortholog | 5/12 | 1/19 |
3 | anoCar1-362 | Anolis carolinensis | dre-miR-460-3p | 22/22 | scaffold_842 | - | 49-70 | 317369-317448 | 0.841468 | Ortholog | 5/12 | 1/19 |
4 | anoCar1-362 | Anolis carolinensis | dre-miR-460-5p | 20/22 | scaffold_842 | - | 14-33 | 317367-317450 | 0.84349 | Ortholog | 5/12 | 1/19 |
5 | anoCar1-362 | Anolis carolinensis | oan-miR-460 | 21/21 | scaffold_842 | - | 14-34 | 317367-317450 | 0.89737 | Ortholog | 5/12 | 1/19 |
6 | danRer5-95 | Danio rerio | dre-miR-460-3p | 22/22 | chr2 | + | 51-72 | 2113450-2113530 | 0.99327 | Paralog | 5/12 | 2/19 |
7 | danRer5-95 | Danio rerio | oan-miR-460* | 20/21 | chr2 | + | 51-71 | 2113450-2113530 | 0.997528 | Paralog | 5/12 | 2/19 |
8 | dre-mir-460 | Danio rerio | dre-miR-460-3p | 22/22 | chr2 | - | 48-69 | N/A | - | miRBase_13_0 | 5/12 | 2/19 |
9 | dre-mir-460 | Danio rerio | dre-miR-460-5p | 22/22 | chr2 | - | 11-32 | N/A | - | miRBase_13_0 | 5/12 | 2/19 |
10 | fr2-65 | Fugu rubripes | oan-miR-460 | 20/21 | chrUn | + | 13-32 | 138725919-138725999 | 0.976901 | Paralog | 5/12 | 2/19 |
11 | fr2-65 | Fugu rubripes | oan-miR-460* | 20/21 | chrUn | + | 51-71 | 138725918-138726000 | 0.979408 | Paralog | 5/12 | 2/19 |
12 | fr2-65 | Fugu rubripes | dre-miR-460-5p | 21/22 | chrUn | + | 14-34 | 138725918-138726000 | 0.976424 | Paralog | 5/12 | 2/19 |
13 | fr2-65 | Fugu rubripes | fru-miR-460 | 22/22 | chrUn | + | 51-72 | 138725918-138726000 | 0.9701 | Paralog | 5/12 | 2/19 |
14 | fru-mir-460 | Fugu rubripes | fru-miR-460 | 22/22 | scaffold_68 | + | 43-64 | N/A | - | miRBase_13_0 | 5/12 | 2/19 |
15 | gga-mir-460 | Gallus gallus | gga-miR-460 | 22/22 | chr2 | + | 15-36 | N/A | - | miRBase_13_0 | 5/12 | 2/19 |
16 | gga-mir-460b | Gallus gallus | gga-miR-460b-5p | 22/22 | chr4 | + | 22-43 | N/A | - | miRBase_13_0 | 5/12 | 2/19 |
17 | gga-mir-460b | Gallus gallus | gga-miR-460b-3p | 23/23 | chr4 | + | 57-79 | N/A | - | miRBase_13_0 | 5/12 | 2/19 |
18 | gasAcu1-585 | Gasterosteus aculeatus | gga-miR-460 | 20/22 | chrXV | + | 26-47 | 2967149-2967243 | 0.9767 | Ortholog | 5/12 | 2/19 |
19 | gasAcu1-585 | Gasterosteus aculeatus | oan-miR-460 | 19/21 | chrXV | + | 26-46 | 2967149-2967243 | 0.987692 | Ortholog | 5/12 | 2/19 |
20 | gasAcu1-82 | Gasterosteus aculeatus | dre-miR-460-5p | 22/22 | chrIII | + | 14-35 | 13882338-13882420 | 0.968383 | Ortholog | 5/12 | 2/19 |
21 | gasAcu1-82 | Gasterosteus aculeatus | oan-miR-460 | 20/21 | chrIII | + | 14-33 | 13882337-13882419 | 0.989366 | Ortholog | 5/12 | 2/19 |
22 | monDom4-469 | Monodelphis domestica | dre-miR-460-5p | 20/22 | chrUn | + | 17-36 | 8716219-8716302 | 0.842477 | Ortholog | 5/12 | 1/19 |
23 | monDom4-469 | Monodelphis domestica | oan-miR-460 | 21/21 | chrUn | + | 14-34 | 8716222-8716304 | 0.867259 | Ortholog | 5/12 | 1/19 |
24 | monDom4-469 | Monodelphis domestica | oan-miR-460* | 20/21 | chrUn | + | 50-70 | 8716222-8716304 | 0.84525 | Ortholog | 5/12 | 1/19 |
25 | oan-mir-460 | Ornithorhynchus anatinus | oan-miR-460* | 21/21 | Contig156328 | - | 50-70 | N/A | - | miRBase_13_0 | 5/12 | 1/19 |
26 | oan-mir-460 | Ornithorhynchus anatinus | oan-miR-460 | 21/21 | Contig156328 | - | 14-34 | N/A | - | miRBase_13_0 | 5/12 | 1/19 |
27 | oryLat2-172 | Oryzias latipes | oan-miR-460* | 20/21 | chr17 | - | 50-70 | 29024041-29024122 | 0.982728 | Ortholog | 5/12 | 1/19 |
28 | oryLat2-172 | Oryzias latipes | oan-miR-460 | 20/21 | chr17 | - | 15-34 | 29024040-29024124 | 0.982344 | Ortholog | 5/12 | 1/19 |
29 | oryLat2-172 | Oryzias latipes | dre-miR-460-3p | 22/22 | chr17 | - | 49-70 | 29024042-29024121 | 0.978326 | Ortholog | 5/12 | 1/19 |
30 | oryLat2-172 | Oryzias latipes | dre-miR-460-5p | 21/22 | chr17 | - | 15-35 | 29024040-29024124 | 0.966789 | Ortholog | 5/12 | 1/19 |
31 | otoGar1-29 | Otolemur garnettii | oan-miR-460 | 20/21 | scaffold_104603.1-356003 | - | 46-66 | N/A | 0.939097 | Ortholog | 5/12 | 1/19 |
32 | otoGar1-29 | Otolemur garnettii | gga-miR-460 | 21/22 | scaffold_104603.1-356003 | - | 46-67 | N/A | 0.944324 | Ortholog | 5/12 | 1/19 |
33 | taeGut1-155 | Taeniopygia guttata | gga-miR-460 | 22/22 | chr2 | - | 14-35 | 1092240-1092322 | 0.898415 | Ortholog | 5/12 | 2/19 |
34 | taeGut1-155 | Taeniopygia guttata | oan-miR-460 | 21/21 | chr2 | - | 14-34 | 1092240-1092322 | 0.940073 | Ortholog | 5/12 | 2/19 |
35 | taeGut1-155 | Taeniopygia guttata | dre-miR-460-5p | 20/22 | chr2 | - | 14-33 | 1092240-1092322 | 0.913138 | Ortholog | 5/12 | 2/19 |
36 | taeGut1-155 | Taeniopygia guttata | oan-miR-460* | 20/21 | chr2 | - | 50-70 | 1092240-1092322 | 0.951854 | Ortholog | 5/12 | 2/19 |
37 | taeGut1-280 | Taeniopygia guttata | gga-miR-460b-3p | 23/23 | chr4A | + | 50-72 | 20408540-20408624 | 0.988177 | Ortholog | 5/12 | 2/19 |
38 | tni-mir-460 | Tetraodon nigroviridis | tni-miR-460 | 22/22 | chr15_random | - | 43-64 | N/A | - | miRBase_13_0 | 5/12 | 1/19 |
39 | xenTro2-3 | Xenopus tropicalis | oan-miR-460* | 20/21 | scaffold_10896 | + | 51-71 | 8268-8351 | 0.929451 | Ortholog | 5/12 | 3/19 |
40 | xenTro2-3 | Xenopus tropicalis | gga-miR-460 | 22/22 | scaffold_10896 | + | 13-34 | 8269-8350 | 0.882472 | Ortholog | 5/12 | 3/19 |
41 | xenTro2-3 | Xenopus tropicalis | oan-miR-460 | 21/21 | scaffold_10896 | + | 13-33 | 8269-8350 | 0.928304 | Ortholog | 5/12 | 3/19 |
42 | xenTro2-3 | Xenopus tropicalis | dre-miR-460-5p | 20/22 | scaffold_10896 | + | 12-31 | 8270-8349 | 0.905084 | Ortholog | 5/12 | 3/19 |
43 | xenTro2-3 | Xenopus tropicalis | dre-miR-460-3p | 22/22 | scaffold_10896 | + | 51-72 | 8268-8351 | 0.880307 | Ortholog | 5/12 | 3/19 |
44 | xenTro2-33 | Xenopus tropicalis | gga-miR-460b-5p | 22/22 | scaffold_258 | + | 13-34 | 1233268-1233349 | 0.996833 | Ortholog | 5/12 | 3/19 |
45 | xenTro2-68 | Xenopus tropicalis | dre-miR-460-5p | 20/22 | scaffold_479 | + | 12-31 | 682642-682721 | 0.905084 | Ortholog | 5/12 | 3/19 |
46 | xenTro2-68 | Xenopus tropicalis | gga-miR-460 | 22/22 | scaffold_479 | + | 13-34 | 682641-682722 | 0.882472 | Ortholog | 5/12 | 3/19 |
47 | xenTro2-68 | Xenopus tropicalis | oan-miR-460 | 21/21 | scaffold_479 | + | 13-33 | 682641-682722 | 0.928304 | Ortholog | 5/12 | 3/19 |
48 | xenTro2-68 | Xenopus tropicalis | oan-miR-460* | 20/21 | scaffold_479 | + | 51-71 | 682640-682723 | 0.929451 | Ortholog | 5/12 | 3/19 |
49 | xenTro2-68 | Xenopus tropicalis | dre-miR-460-3p | 22/22 | scaffold_479 | + | 51-72 | 682640-682723 | 0.880307 | Ortholog | 5/12 | 3/19 |
Total | 49 record(s). |